Protein Info for EX31_RS01715 in Rahnella sp. WP5

Annotation: DNA replication protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 234 PF06992: Phage_lambda_P" amino acids 40 to 202 (163 residues), 213.8 bits, see alignment E=6.2e-68

Best Hits

Swiss-Prot: 37% identical to VG14_BPPH8: Replication protein 14 (14) from Enterobacteria phage phi80

KEGG orthology group: None (inferred from 52% identity to eic:NT01EI_2300)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (234 amino acids)

>EX31_RS01715 DNA replication protein (Rahnella sp. WP5)
MGEHPVNKMMMAVKNRDGAALAKMMPEDQPQRVVNADAEKLVDVLFTNLMQIFPAARQTA
LSTPADVAAAKRQWIMAFVESGVTTLEQVQAGMRVARQQETDFWPSCGKFIGWCKSGAAQ
AAGLPSVDEVMAEFNQYCARRGDYSTPAAYPWSAPIMYWIVTDVRRLMLQNNYTEGEVRK
SVQHQLTIWSKRLAKGEQIPAPVVMLTAPKAPAGPTPAQIMYDEYLRKKREGWL