Protein Info for EX31_RS01495 in Rahnella sp. WP5

Annotation: multidrug efflux RND transporter permease subunit

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1050 signal peptide" amino acids 1 to 29 (29 residues), see Phobius details transmembrane" amino acids 342 to 362 (21 residues), see Phobius details amino acids 369 to 390 (22 residues), see Phobius details amino acids 396 to 419 (24 residues), see Phobius details amino acids 440 to 461 (22 residues), see Phobius details amino acids 472 to 499 (28 residues), see Phobius details amino acids 548 to 567 (20 residues), see Phobius details amino acids 878 to 898 (21 residues), see Phobius details amino acids 905 to 925 (21 residues), see Phobius details amino acids 931 to 955 (25 residues), see Phobius details amino acids 977 to 998 (22 residues), see Phobius details amino acids 1010 to 1034 (25 residues), see Phobius details PF00873: ACR_tran" amino acids 3 to 1034 (1032 residues), 1141.1 bits, see alignment E=0 TIGR00915: RND transporter, hydrophobe/amphiphile efflux-1 (HAE1) family" amino acids 3 to 1042 (1040 residues), 1175.6 bits, see alignment E=0 PF03176: MMPL" amino acids 347 to 514 (168 residues), 44.4 bits, see alignment E=1.1e-15

Best Hits

KEGG orthology group: None (inferred from 72% identity to adk:Alide2_4818)

Predicted SEED Role

"RND efflux system, inner membrane transporter CmeB" in subsystem Multidrug Resistance Efflux Pumps or Multidrug efflux pump in Campylobacter jejuni (CmeABC operon)

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1050 amino acids)

>EX31_RS01495 multidrug efflux RND transporter permease subunit (Rahnella sp. WP5)
MDFSRFFIDRPIFAAVLSILILVTGAIAIPLLPVSEYPNVVPPSVQVRAEYPGANPKVIA
ETVATPLEEAINGVENMVYMKSVAGSDGVLVTTVTFRPGTDPDQAQVQVQNRVAQAEARL
PEDVRRQGVTTQKQSPTLTLVVHLVSPSGKYDSLYLSNYATLKVKDELARLPGVGQIQIF
GAGEYAMRVWLDPNKVAARGLTASDIVKAMQEQNVQVSAGQLGAEPMPKDSDYLLSINAQ
GRLKDEDEFGKIILKSGDNGEIVRLRDVARIEMGSGSYALRAQLNNKDAVGIGIFQSPGA
NAIDLSDAVRAKMDELATRFPEGMTWRAPYDPTVFVRDSISAVVHTLLEAVVLVVLVVIL
FLQTWRASIIPLLAVPISVIGTFSILYLLGFSLNTLSLFGLVLAIGIVVDDAIVVVENVE
RNIEEGLAPRDAAHQAMREVSGPIVAIALVLCAVFVPMAFLSGVTGQFYKQFAVTIAIST
VISAINSLTLSPALAALLLKSHGAPKDMPSRLIDRLFGWIFRPFNRFFNASSHRYQNAVS
KTLGRRGAVFVVYILLLCAAAFMFKAVPGGFIPTQDKLYLIAGVKMPEGASLSRTDAVIR
KISAMGLSTDGVIDAVAFPGLNALQFTNTPNTGTVFFALKPLSERTRTAAEINAEINAKI
SQIQEGFAFSIMPPPILGLGQGSGYSLYIQDRAGLGYGALQTAINTMSGAIMQTPGMGYP
ISSYQANVPQLDAHIDRDKAKAQGVSLDELFSTLQVYLGSSYINDFNRFGRTWKVMAQAD
GQFRDTVEDIANLRTRNDKGEMVPIGSMLNITTTYGPDPVIRYNGYPAADLIGDADPRVL
SSTQAMTELTAMSKNLLPNGMNIEWTDLSYQQSTQGNAALIVFPMSVLLAFLVLAALYES
WTLPLAVILIVPMTMLSALFGVWLTGGDNNVFVQVGLVVLMGLACKNAILIVEFARELEL
QGKGIIESALEACRLRLRPIVMTSIAFIAGTIPLILGHGAGAEVRGVTGITVFSGMLGVT
LFGLFLTPVFYVALRKLVTRKKVILETQTV