Protein Info for EX31_RS01465 in Rahnella sp. WP5

Annotation: oligogalacturonate lyase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 393 PF14583: Pectate_lyase22" amino acids 1 to 385 (385 residues), 683.5 bits, see alignment E=7.4e-210

Best Hits

Swiss-Prot: 69% identical to OGL_DICD3: Oligogalacturonate lyase (ogl) from Dickeya dadantii (strain 3937)

KEGG orthology group: K01730, oligogalacturonide lyase [EC: 4.2.2.6] (inferred from 99% identity to rah:Rahaq_4486)

MetaCyc: 69% identical to oligogalacturonate lyase (Dickeya dadantii 3937)
Oligogalacturonide lyase. [EC: 4.2.2.6]; 4.2.2.- [EC: 4.2.2.6]

Predicted SEED Role

"Oligogalacturonate lyase (EC 4.2.2.6)" in subsystem D-Galacturonate and D-Glucuronate Utilization (EC 4.2.2.6)

MetaCyc Pathways

KEGG Metabolic Maps

Isozymes

No predicted isozymes

Use Curated BLAST to search for 4.2.2.6

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (393 amino acids)

>EX31_RS01465 oligogalacturonate lyase (Rahnella sp. WP5)
MAKGSQIQFNFHTVQDPQTGARVTRLTPPDVLCHRNYFYQKCFTRDGNKLLFAGEFDGNR
NYYLLDLETQKAVQLTEGKGDNTFGGFLSPDDQYLYYVKNERSLQCVKLADFSEHTVYQV
PEEWVGYGTWVANSECTRLVGIEISREDWTPLSDWKIFQAFYHSNPHCRLLRVDLLSGKS
RVIHEKNEWLGHPIYRPFDDNTVAFCHEGPHDLVDARMWLVNEDGSNVRKVKEHAPGESC
THEFWVPDGSALMYVSYLKGQHDRHIRRFDPQTGEDVCLMTMPACSHLMSNENGTLLVGD
GSGTPVDVKDTASHTIENDPWLYIFDAKTRQHAPLAAHNSSWQVLDGDRQVTHPHPSFSP
DDRHVLFTTDYEGLPALYLAEIPDALLSSLRKD