Protein Info for EX31_RS01155 in Rahnella sp. WP5

Annotation: AEC family transporter

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 314 transmembrane" amino acids 6 to 23 (18 residues), see Phobius details amino acids 34 to 54 (21 residues), see Phobius details amino acids 66 to 89 (24 residues), see Phobius details amino acids 101 to 120 (20 residues), see Phobius details amino acids 126 to 147 (22 residues), see Phobius details amino acids 174 to 193 (20 residues), see Phobius details amino acids 205 to 224 (20 residues), see Phobius details amino acids 241 to 258 (18 residues), see Phobius details amino acids 263 to 282 (20 residues), see Phobius details amino acids 294 to 313 (20 residues), see Phobius details PF03547: Mem_trans" amino acids 6 to 305 (300 residues), 138.8 bits, see alignment E=8.5e-45

Best Hits

KEGG orthology group: K07088, (no description) (inferred from 100% identity to rah:Rahaq_5028)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (314 amino acids)

>EX31_RS01155 AEC family transporter (Rahnella sp. WP5)
MPTLLLSSLFPLVFIMVLGWLSGKLGYMKRDDATVLATVVIRFALPLHLFIGALHTDPAK
IQNLSFMAVLVIGLMGSYLLTLCISRWFFRHDIKTSAIQSLVCAFPDMAYFGAPVLAVLI
GPEGFLGVLVGNLITSVLMIPLTIVLIRMGDKNSDLAQQGSLGKMILNNLFKAVRNPIVW
IPVLGVVMSLAGIKIPELLSSSVEMMGKTAGGISLFALGLLFFGERPTLNIHTVTNIGMK
NLIQPAIMAAAGLAFGLSHTLMQQVVIIGATPSAIAAGMFAVRSDTYVESASSSILIGTA
LGIVTEGLVIYMMS