Protein Info for EX31_RS01080 in Rahnella sp. WP5
Annotation: metal ABC transporter substrate-binding protein
These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.
Protein Families and Features
Best Hits
Swiss-Prot: 79% identical to HPF_HAEI3: Putative metal ABC transporter substrate-binding protein Hpf (hpf) from Haemophilus influenzae (strain NTHi 3655)
KEGG orthology group: K11604, manganese/iron transport system substrate-binding protein (inferred from 99% identity to rah:Rahaq_4944)Predicted SEED Role
"Manganese ABC transporter, periplasmic-binding protein SitA" in subsystem Transport of Manganese
Sequence Analysis Tools
PaperBLAST (search for papers about homologs of this protein)
Search CDD (the Conserved Domains Database, which includes COG and superfam)
Predict protein localization: PSORTb (Gram-negative bacteria)
Predict transmembrane helices and signal peptides: Phobius
Check the current SEED with FIGfam search
Find homologs in fast.genomics or the ENIGMA genome browser
Find the best match in UniProt
Protein Sequence (313 amino acids)
>EX31_RS01080 metal ABC transporter substrate-binding protein (Rahnella sp. WP5) MEKGQSILKLFSYSPFRLRLMLVGMIVALITGNVQAAEKDKKKFKVVTTFTVIQDIAQNV AGDAATVESITKPGAEIHDYQPTPRDIVKTQSADLILWNGFNLERWFGRFFANIRNVPSA TVTDGIAPLPIQEGPYVGNPNPHAWMSAKNALVYVENIRAALVKYDPENAAVYDRNAKNY AEKISLLDAPLRERLAKIPEGQRWLVTSEGAFSYLAKDYGLKEAYLWPINAEEQGTPQQV KKIIDLVRQQNIPVVFSESTISDKPAKQVSKETGAKYGGVLYVDSLSAADGPVPTYIDLL KVTVSTIAEGFGQ