Protein Info for EX31_RS00575 in Rahnella sp. WP5

Annotation: DUF554 domain-containing protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 237 transmembrane" amino acids 6 to 24 (19 residues), see Phobius details amino acids 34 to 51 (18 residues), see Phobius details amino acids 57 to 75 (19 residues), see Phobius details amino acids 108 to 126 (19 residues), see Phobius details amino acids 138 to 162 (25 residues), see Phobius details amino acids 167 to 184 (18 residues), see Phobius details amino acids 189 to 208 (20 residues), see Phobius details amino acids 214 to 234 (21 residues), see Phobius details PF04474: DUF554" amino acids 3 to 229 (227 residues), 214.6 bits, see alignment E=6.2e-68

Best Hits

KEGG orthology group: None (inferred from 68% identity to pao:Pat9b_3257)

Predicted SEED Role

"Putative inner membrane protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (237 amino acids)

>EX31_RS00575 DUF554 domain-containing protein (Rahnella sp. WP5)
MLIGPIVNSGAIILGGLLGGFLGVKMPERLRTSLPQTFGLCSMALGVVLLVKMHSMPVVI
LSVILGAAIGELFYLERYIARLGNMARGIASKFAPDTGMDHNVFTEKFVAIIVLFCASGT
GIIGAMTEGMTHDPNILFVKAIMDLFTAAIFATVLGYAVALIFIPQWIVQFLIASAAVSI
LPLTNAEMMGDFTAAGGFIMLAAGFRISGIKSIAVGNLLPALILVMPISHYWSLLIH