Protein Info for EX31_RS00490 in Rahnella sp. WP5

Annotation: paraquat-inducible protein A

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 205 transmembrane" amino acids 48 to 68 (21 residues), see Phobius details amino acids 79 to 92 (14 residues), see Phobius details amino acids 97 to 120 (24 residues), see Phobius details amino acids 139 to 159 (21 residues), see Phobius details amino acids 171 to 188 (18 residues), see Phobius details PF04403: PqiA" amino acids 45 to 196 (152 residues), 123.1 bits, see alignment E=5e-40

Best Hits

KEGG orthology group: K03808, paraquat-inducible protein A (inferred from 100% identity to rah:Rahaq_4829)

Predicted SEED Role

"Paraquat-inducible protein A" in subsystem Oxidative stress

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (205 amino acids)

>EX31_RS00490 paraquat-inducible protein A (Rahnella sp. WP5)
MKIYPQQVVCKHCDSLYTRKPVRSGEAAHCQRCRAVLYRGSWLSLEQWFALTVTAALFFI
IANAFPVLEIQFHGQVQAATLWQTAMALAYSYASPLAIPLAMLIIVCPCLQILLLGWVLW
HACRKKAAPGLASAMRLLAGLAPWSMAEVALLSILIAAIKLSGLVQITPGPGTWALLGLC
LLLPVINHQDFHPLWSLKTLKGQRE