Protein Info for EX31_RS00415 in Rahnella sp. WP5

Annotation: ABC transporter ATP-binding protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 272 PF00005: ABC_tran" amino acids 29 to 177 (149 residues), 90.6 bits, see alignment E=6.9e-30

Best Hits

KEGG orthology group: K02031, peptide/nickel transport system ATP-binding protein (inferred from 97% identity to rah:Rahaq_4814)

Predicted SEED Role

"Oligopeptide transport system permease protein OppB (TC 3.A.1.5.1)" in subsystem ABC transporter oligopeptide (TC 3.A.1.5.1) (TC 3.A.1.5.1)

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (272 amino acids)

>EX31_RS00415 ABC transporter ATP-binding protein (Rahnella sp. WP5)
MTHNRTQNTEPVLAVEGLTVRLAGEERVSRLSFSVSAGERVCLLGASGSGKSLTAKAITG
TLPAGAIPGGSIRVNSVEVRGRHPVSRCAASRVATVFQDSSTALNPLMTLGKQLRLALPA
TSEDEICTMLDAVGLGDIAQFSTRYPAELSGGQRQRLCLALAMQSSSSLLVADEPTTALD
VLTQQQVLQVMHKACTRPQSPRALLFITHDIAVAAQLCERALVMENGVLVESAGMAQLLR
HPQHPYSRKLVHAARQAAALHQNAASLRGVAV