Protein Info for EX31_RS00030 in Rahnella sp. WP5

Annotation: PTS transporter subunit EIIC

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 466 transmembrane" amino acids 104 to 131 (28 residues), see Phobius details amino acids 141 to 163 (23 residues), see Phobius details amino acids 172 to 194 (23 residues), see Phobius details amino acids 214 to 234 (21 residues), see Phobius details amino acids 253 to 274 (22 residues), see Phobius details amino acids 281 to 308 (28 residues), see Phobius details amino acids 328 to 351 (24 residues), see Phobius details amino acids 359 to 380 (22 residues), see Phobius details amino acids 387 to 410 (24 residues), see Phobius details amino acids 426 to 449 (24 residues), see Phobius details PF00367: PTS_EIIB" amino acids 4 to 34 (31 residues), 51.2 bits, see alignment (E = 6.4e-18) PF02378: PTS_EIIC" amino acids 107 to 392 (286 residues), 117.1 bits, see alignment E=9.3e-38

Best Hits

KEGG orthology group: None (inferred from 100% identity to rah:Rahaq_4723)

Predicted SEED Role

"PTS system, beta-glucoside-specific IIB component (EC 2.7.1.69) / PTS system, beta-glucoside-specific IIC component / PTS system, beta-glucoside-specific IIA component" in subsystem Beta-Glucoside Metabolism (EC 2.7.1.69)

KEGG Metabolic Maps

Isozymes

Compare fitness of predicted isozymes for: 2.7.1.69

Use Curated BLAST to search for 2.7.1.69

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (466 amino acids)

>EX31_RS00030 PTS transporter subunit EIIC (Rahnella sp. WP5)
MLSVIKLVGGAGNINKVWHCMTRLRFDLRDENKVAWDEIKNLPGVLGAQSQSDQVQIIIG
PKVNVWYEAIVSQLDPVSGNAETPTGNVSTKGRKSLVSMFMDTVSGVFGPIVPAIAGAGM
IKGLLAGLIALKVISAKSETVMIIDLIASGVFYFLPFFLAVSAAKIFKTNEYLAAAVAAC
LMYPTLMDAAKALASHTAGAPTALYFMDVLPVSVFNYSASVIPVIFSVLALSYIHRWVDK
IMPDVLKTVFTPTLTLFIAALVSLTLIGPAGIYLGKLLAFGIQGLFDVSAVFAGFIVGAI
RPVAILTGMHHAMTPIALQNFTDQGWDMLMPMMFMANMAIAGSTFAIYFHVKTREQKSVV
LSAAISGLLGITEPALFGVLTRYKKAFIATTISSSVASAFIAFFGVRLYGYILSSIFSLP
AYIGPYFIYILMGVVLSLGLSFTLTYLMVVKNKGTEQSVPLVNQTR