Protein Info for ECOLIN_RS30565 in Escherichia coli Nissle 1917

Annotation: prophage lysis lipoprotein RzoD

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 25 60 signal peptide" amino acids 1 to 25 (25 residues), see Phobius details PF06085: Rz1" amino acids 20 to 59 (40 residues), 71.8 bits, see alignment E=1.5e-24

Best Hits

Swiss-Prot: 98% identical to SPAN2_LAMBD: Spanin, outer lipoprotein subunit (Rz1) from Escherichia phage lambda

KEGG orthology group: None (inferred from 98% identity to eco:b4510)

Predicted SEED Role

"Phage outer membrane lipoprotein Rz1"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (60 amino acids)

>ECOLIN_RS30565 prophage lysis lipoprotein RzoD (Escherichia coli Nissle 1917)
MRKLKMMLCVMMLPLVVVGCTSKQSVSQCVKPPPPPAWIMQPPPDWQTPLNGIISPSERG