Protein Info for ECOLIN_RS17885 in Escherichia coli Nissle 1917

Annotation: DUF805 domain-containing protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 122 transmembrane" amino acids 23 to 41 (19 residues), see Phobius details amino acids 52 to 70 (19 residues), see Phobius details amino acids 82 to 102 (21 residues), see Phobius details PF05656: DUF805" amino acids 11 to 117 (107 residues), 127.9 bits, see alignment E=1.1e-41

Best Hits

Swiss-Prot: 100% identical to YHAH_ECO57: Inner membrane protein YhaH (yhaH) from Escherichia coli O157:H7

KEGG orthology group: None (inferred from 100% identity to ecj:JW3074)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (122 amino acids)

>ECOLIN_RS17885 DUF805 domain-containing protein (Escherichia coli Nissle 1917)
MDWYLKVLKNYVGFRGRARRKEYWMFILVNIIFTFVLGLLDKMLGWQRAGGEGILTTIYG
ILVFLPWWAVQFRRLHDTDRSAWWALLFLIPFIGWLIIIVFNCQAGTPGENRFGPDPKLE
QD