Protein Info for ECOLIN_RS14250 in Escherichia coli Nissle 1917

Annotation: DUF823 domain-containing adhesin

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 200 400 600 800 1000 1200 1400 1600 1800 2000 2200 2400 2683 signal peptide" amino acids 1 to 27 (27 residues), see Phobius details PF05688: BIg21" amino acids 214 to 316 (103 residues), 94.7 bits, see alignment (E = 7.5e-31) amino acids 478 to 584 (107 residues), 84.8 bits, see alignment (E = 8.9e-28) amino acids 740 to 851 (112 residues), 81.8 bits, see alignment (E = 7.8e-27) amino acids 1019 to 1134 (116 residues), 89.6 bits, see alignment (E = 2.9e-29) amino acids 1307 to 1418 (112 residues), 83.7 bits, see alignment (E = 1.9e-27) amino acids 1594 to 1702 (109 residues), 69.7 bits, see alignment (E = 4.4e-23) amino acids 1876 to 1987 (112 residues), 71.7 bits, see alignment (E = 1.1e-23) amino acids 2160 to 2273 (114 residues), 76.3 bits, see alignment (E = 3.9e-25) amino acids 2437 to 2550 (114 residues), 84.8 bits, see alignment (E = 8.8e-28) PF05689: InvE_AD" amino acids 319 to 444 (126 residues), 95 bits, see alignment 7.8e-31 amino acids 587 to 713 (127 residues), 103.5 bits, see alignment 1.8e-33 amino acids 855 to 987 (133 residues), 108.3 bits, see alignment 6e-35 amino acids 1137 to 1275 (139 residues), 134.1 bits, see alignment 6.5e-43 amino acids 1421 to 1558 (138 residues), 107.3 bits, see alignment 1.3e-34 amino acids 1705 to 1839 (135 residues), 110.2 bits, see alignment 1.6e-35 amino acids 1990 to 2122 (133 residues), 104.1 bits, see alignment 1.2e-33 amino acids 2276 to 2405 (130 residues), 109.3 bits, see alignment 3e-35 amino acids 2554 to 2657 (104 residues), 61.7 bits, see alignment (E = 1.5e-20)

Best Hits

Predicted SEED Role

"RatA homolog"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (2683 amino acids)

>ECOLIN_RS14250 DUF823 domain-containing adhesin (Escherichia coli Nissle 1917)
MSLTLNKILVLCALLISAMLPGWSWAESAWQDSSDTVGEFNGTVPTADSASIPVYQGSVF
LDPTKTHEVAFTAKPSEFNADVSVSKLLVTNPQDREGDIIATPRWENQTPPAVSLVWADA
ATPDTLLDPQPVADRSFCAQGLAGRSLVAWAQPDPQQTMPLLYLLTSTGYPYESVLTLAD
QKVTLKIAPAQGDLISVSAAGYDESSGAAKMTVGGSITLTVTTKDCVGNVVGNIPFVIKR
KDAENRQGVVNNTAPVKLGTTELTTTATEYRGTTDANGVATVTVTQANGPGVKTPLVASL
AGIAQASETAVIFTVLTSPDVPQATMWGHMPDTLKARDYTFSRPKLAAEVDNEGGTVNDH
NETWSTFTWSGADKHCDILPGMRQFGALATVVPTSVQDVAGWPMQGNFYWSSLAGMSGQH
HAADVSNRSEAQKPDDTTFIVSCVDKEAPDVEPKLVLTPGSYDSTIKAMKVKVGEEASLR
LTITDSKNNDQPLAYYYFSLHLDDGINRKNQTDAAWETHPVQIDGGSNVRKVDAHTYEGI
TDANGEATLTLTQPGGVGVKTHITARMRSDFTASDEKDVIFTVITSPDTDKARMWGHMLG
IIEANNIFKRPRLADETDNELGSVRENNEDWALFDQNSSMQAECGLGHIPSQSSLHSLFA
AHPANAIGTEYGWPTLQKAYLSAVEETSHASVNLATGNIDTYSGFKQNYLSCSGNEMVAK
IAATTDRDVSAGSRAQAKVGDTITMTVRTFNALNNAPVPYTAFTITKDMGKNRQGQTTGF
DDPTRGAIEMNGTLYGTSQPSLVYAGTTDAQGFATVEIKQSQGVGLSTPLNIVPVNSYIP
NTVNYNVIFTTLTSPDAVGAQMWGHMDETITVDALTFARPRLAAEVFSPDGTLTENNEVW
SRVSQANASSTSKGGCGANMLPRRSQLSALYDANNGNGVQTVHGWPTQRQPYWSSSPADQ
VPHYYTIALNDGARTVGGSTAVYVSCLTTANNPASSITLEVVDPAQWNAAANAAKLKKGE
TLQVKVTVKDAQGNPLGDIPFTLKRGDGYTRSEEKHVAGSSDALVAPVVVNGGLADETSL
NNTAAAYSAMTGSDGTKILTITRPDTHGTKTSLTARLYSDTTKKATLDTIFTVVTSPDSD
KAKMWGHMPETVTAADGAVFKRPLLLKELSSTSGRTAIAEDNEDWAQFTQAQAISTSSNG
CGSEYVPSQAGLESLYEANRGNAMKTVQGWPVASSYLSSTTGSSSLEQRDFKAVNLSSGT
SSIIPSATKELLTCQTTPIVKASQIVLEAADLTKFDRMNNVVKVKKGEEAVLRVTTKDAQ
GKPVGNTAFTLKRNTSVNRANVSTTTSIASLAVTDAWGNTQNDFLSTTLVIYGVTGADGT
TTFTLKQDQTTGLKTELTAALDSSSSTKSTLPVVFTVLTSPDSPKAKFWGHMAETATGDD
GLIYRRPLLRDENSATTSIGTLVEEGEAWSTFPSGQANDTSINGCGAEYVPTDNELRAIY
AHQGSSALHDAIGWPVSRFYISNTVADTFTQTFTYDVVSLKTGDETQMPSSGGALLSCRT
TPVAVASQIIVEANDTAQFVKVDDTLSALKVKKGEDAVIRVVTKNAQGNSVPNVPFILRR
EGSKNRQNAEMINKSITVINAAGASARMNSSSSLLYGVTGADGTTSFTVKQDDSMGLVTN
MYAQLYQLTIESNKLPVMFTVITSPDTPLASYWGHMPETFTTRSGIAFKRPLLTAEHPAG
QSTMANNESWLSLNTAAKNDVSKSDCGEPYQPLLSEFQELYSEHPNGAIGTDLGLPLTNT
WWAYDKIAYANVWYDQSINLSNGSSSRALSNTVAFVSCLVNPHAVAASIEMTSTALDAEK
TASNDGRPSATAAKGTAIRMTVIVRDSGGNLLPGANFNLIRGTALDRAKNRLDSTYDDLT
IVPVTPAGVNMSLYNNGAQALLTTGSDGKATFDVTQNETYGLATPLTATLMRDTTKSATM
DVIFTVITSPNSPKAKYWGHMPDTFTSRAGVTFKRPLLAAEATLGSSVSNNNESWSYLFY
TNKVTPDCPVEYQPRLNELQGLYNDHPGGTILTDLGLPITAGSGNWWTYEMSTTDALTWY
YGVINLKTGQSTTTINGYALMLCLTQPHSAPASLTLSSTAYDEGRTASNGGTPTSSVKKG
EMLPIVVTIKDANGNPVGGEGVTLKRVQAKSRSGISVSSNTVDDLILDEVTPTSARISFN
QNTSAWSGFTGSDGTITFNVTQNNTVGLVTPFTASLARNPQVTANQDLIFTVVTSPDSAK
ANYWGHMPATLTAVNGAVFERPKLWSELTSTSGVGKINNNNEDWPYFTPTQKSDASVSPC
EVARQPLFNDLSSLSARYPNNTFVTETGWPAYYTWWAEDKSADGKDQSVDLRNGTLYTGS
TKSFQPCLANARSTVSSVTLTSTAFDAATQAAKVKKGEAMSVTVTVKDSAGNTVPNVEFT
LKRGEASPRNAGATLYGNVVAMDDLVVQPLSGSAVTLSESGNTISGMTGADGTASFSLRQ
DNTPGYKTPLTVTLANYASATDTLDAIFTVPTSPNVSSAHFWGHMADTVVVNSKSLHRPL
LTTELPSGANPVSSPIINYENWASAHIIDASKWDIARQCGSIENAPTYNELELLHTVFNS
LGWPSSPSFPYLSSQQCGMDEGTGAQDCSITLINKPGLVTCFQ