Protein Info for ECOLIN_RS11180 in Escherichia coli Nissle 1917
Annotation: glyoxalase III HchA
These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.
Protein Families and Features
No protein families (PFam or TIGRFam), signal peptides, or transmembrane helices were found in this protein.
Best Hits
Swiss-Prot: 100% identical to HCHA_ECOL5: Protein/nucleic acid deglycase HchA (hchA) from Escherichia coli O6:K15:H31 (strain 536 / UPEC)
KEGG orthology group: K05523, molecular chaperone HchA (Hsp31) (inferred from 99% identity to eco:b1967)MetaCyc: 99% identical to protein/nucleic acid deglycase 1 (Escherichia coli K-12 substr. MG1655)
GLYOXIII-RXN [EC: 4.2.1.130]; RXN-17630 [EC: 4.2.1.130, 3.5.1.124]; 3.5.1.124 [EC: 4.2.1.130, 3.5.1.124]; 3.5.1.124 [EC: 4.2.1.130, 3.5.1.124]
Predicted SEED Role
"Chaperone protein hchA"
MetaCyc Pathways
- methylglyoxal degradation IX (1/1 steps found)
Isozymes
No predicted isozymesUse Curated BLAST to search for 3.5.1.124 or 4.2.1.130
Sequence Analysis Tools
PaperBLAST (search for papers about homologs of this protein)
Search CDD (the Conserved Domains Database, which includes COG and superfam)
Compare to protein structures
Predict protein localization: PSORTb (Gram-negative bacteria)
Predict transmembrane helices and signal peptides: Phobius
Check the current SEED with FIGfam search
Find homologs in fast.genomics or the ENIGMA genome browser
Find the best match in UniProt
Protein Sequence (283 amino acids)
>ECOLIN_RS11180 glyoxalase III HchA (Escherichia coli Nissle 1917) MTVQTSKNPQVDIAEDNAFFPSEYSLSQYTSPVSDLDGVDYPKPYRGKHKILVIAADERY LPTDNGKLFSTGNHPIETLLPLYHLHAAGFEFEVATISGLMTKFEYWAMPHKDEKVMPFF EQHKSLFRNPKKLADVVASLNADSEYAAIFVPGGHGALIGLPESQDVAAALQWAIKNDRF VISLCHGPAAFLALRHSDNPLNGYSICAFPDAADKQTPDIGYMPGHLTWYFGEELKKMGM NIINDDITGRVHKDRKLLTGDSPFAANALGKLAAQEMLAAYAS