Protein Info for ECOLIN_RS10070 in Escherichia coli Nissle 1917

Annotation: DUF1889 family protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 25 50 75 99 PF08986: DUF1889" amino acids 1 to 96 (96 residues), 162.4 bits, see alignment E=1.1e-52

Best Hits

Swiss-Prot: 96% identical to YOAC_SHIFL: Uncharacterized protein YoaC (yoaC) from Shigella flexneri

KEGG orthology group: None (inferred from 100% identity to ecc:c2214)

Predicted SEED Role

"FIG00639292: hypothetical protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (99 amino acids)

>ECOLIN_RS10070 DUF1889 family protein (Escherichia coli Nissle 1917)
MPAVIDKALDFIGAMDVSAPTPSSMNESTAKGIFKYLKELGVPASAADITTRADLEGWNP
GFTEKMVGWAKKMESGERIVIKNPEYFSTYMQEELKALV