Protein Info for ECOLIN_RS01965 in Escherichia coli Nissle 1917

Annotation: inverse autotransporter adhesin FdeC

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1200 1300 1416 transmembrane" amino acids 21 to 44 (24 residues), see Phobius details PF11924: IAT_beta" amino acids 76 to 350 (275 residues), 365.2 bits, see alignment E=6.4e-113 PF09134: Invasin_D3" amino acids 474 to 572 (99 residues), 33.6 bits, see alignment 1.1e-11 amino acids 579 to 680 (102 residues), 43 bits, see alignment 1.3e-14 amino acids 684 to 783 (100 residues), 46.4 bits, see alignment 1.2e-15 amino acids 788 to 885 (98 residues), 47.4 bits, see alignment 5.7e-16 amino acids 890 to 986 (97 residues), 43.4 bits, see alignment 1e-14 amino acids 1001 to 1090 (90 residues), 45.8 bits, see alignment 1.8e-15 amino acids 1095 to 1193 (99 residues), 36.5 bits, see alignment 1.4e-12 PF02369: Big_1" amino acids 1010 to 1075 (66 residues), 58.7 bits, see alignment 1.1e-19 amino acids 1109 to 1176 (68 residues), 50.7 bits, see alignment 3.6e-17 amino acids 1212 to 1278 (67 residues), 49.7 bits, see alignment 7.4e-17

Best Hits

KEGG orthology group: K13735, adhesin/invasin (inferred from 100% identity to ecc:c0415)

Predicted SEED Role

"Putative adhesin"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1416 amino acids)

>ECOLIN_RS01965 inverse autotransporter adhesin FdeC (Escherichia coli Nissle 1917)
MSRYKTDNKQPRFRYSVLARCVAWANISVQVLFPLAVTFTPVMAARAQHAVQPRLSMENT
TVTADNNVEKNVASLAANAGTFLSSQPDSDATRNFITGMATAKANQEIQEWLGKYGTARV
KLNVDKKFSLKDSSLEMLYPIYDTPTNMLFTQGAIHRTDDRTQSNIGFGWRHFSENDWMA
GVNTFIDHDLSRSHTRIGVGAEYWRDYLKLSANGYIRASGWKKSPDVEDYQERPANGWDI
RAEGYLPAWPQLGASLMYEQYYGDEVGLFGKDKRQKDPHAITAEVNYTPVPLLTLSAGHK
QGKSGENDTRFGLEVNYRIGEPLEKQLDTDSIRERRMLAGSRYDLVERNNNIVLEYRKSE
VIRIALPERIEGKGGQTVSLGLVVSKATHGLKNVQWEAPSLLAAGGKITGQGNQWQVTLP
AYQAGKDNYYAISAIAYDNKGNASKRVQTEVVISGAGMSADRTALTLDGQSRIQMLANGN
EQKPLVLSLRDAEGQPVTGMKDQIKTELTFKPAGNIVTRTLKATKSQAKPTLGEFTETEA
GVYQSVFTTGTQSGEATITVSVDDMSKTVTAELRATMMDVANSTLSANEPSGDVVADGQQ
AYTLTLTAVDSEGNPVTGEASRLRLVPQDTNGVTVGAISEIKPGVYSATVSSTRAGNVVV
RAFSEQYQLGTLQQTLKFVAGPLDAAHSSITLNPDKPVVGGTVTAIWTAKDANDNPVTGL
NPDAPSLSGAAAAGSTASGWTDNGDGTWTAQISLGTTAGELDVMPKLNGQDAAANAAKVT
VVADALSSNQSKVSVAEDHVKAGESTTVTLVAKDAHGNAISGLSLSASLTGTASEGATVS
SWTEKGDGSYVATLTTGGKTGELRVMPLFNGQPAATEAAQLTVIAGEMSSANSTLVADNK
TPTVKTTTELTFTVKDAYGNPVTGLKPDAPVFSGAASTGSERPSAGNWTEKGNGVYVSTL
TLGSAAGQLSVMPRVNGQNAVAQPLVLNVAGDASKAEIRDMTVKVNNQLANGQSANQITL
TVVDSYGNPLQGQEVTLTLPQGVTSKTGNTVTTNAAGKVDIELMSTVAGELEIEASVKNS
QKTVKVKFKADFSTGQASLEVDAAAQKVANGKDAFTLTATVKDQYGNLLPGAVVVFNLPR
GVKPLADGNIMVNADKEGKAELKVVSVTAGTYEITASAGNDQPSNAQSVTFVADKTTATI
SSIEVIGNRAVADGKTKQTYKVTVTDANNNLLKDSEVTLTASPENLVLTPNGTATTNEQG
QAIFTATTTVAATYTLTAKVEQADGQESTKTAESKFVADDKNAVLAASPERVDSLVADGK
TTATLTVTLMSGVNPVGGTMWVDIEAPEGVTEADYQFLPSKNDHFASGKITRTFSTNKPG
TYTFTFNSLTYGGYEMKPVTVTINAVPADTEGAEEK