Protein Info for Dsui_3520 in Dechlorosoma suillum PS

Annotation: heavy metal efflux pump, cobalt-zinc-cadmium

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1035 transmembrane" amino acids 12 to 32 (21 residues), see Phobius details amino acids 333 to 353 (21 residues), see Phobius details amino acids 357 to 377 (21 residues), see Phobius details amino acids 385 to 410 (26 residues), see Phobius details amino acids 440 to 461 (22 residues), see Phobius details amino acids 472 to 498 (27 residues), see Phobius details amino acids 532 to 551 (20 residues), see Phobius details amino acids 874 to 893 (20 residues), see Phobius details amino acids 898 to 920 (23 residues), see Phobius details amino acids 927 to 948 (22 residues), see Phobius details amino acids 972 to 991 (20 residues), see Phobius details amino acids 1003 to 1026 (24 residues), see Phobius details TIGR00914: heavy metal efflux pump, CzcA family" amino acids 1 to 1030 (1030 residues), 1014.8 bits, see alignment E=0 PF00873: ACR_tran" amino acids 6 to 1026 (1021 residues), 911.2 bits, see alignment E=4.1e-278

Best Hits

KEGG orthology group: K07239, heavy-metal exporter, HME family (inferred from 67% identity to mep:MPQ_1252)

Predicted SEED Role

"Cobalt-zinc-cadmium resistance protein CzcA; Cation efflux system protein CusA"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See G8QM01 at UniProt or InterPro

Protein Sequence (1035 amino acids)

>Dsui_3520 heavy metal efflux pump, cobalt-zinc-cadmium (Dechlorosoma suillum PS)
MLERLVTFALAQRLFVIVGVLVLIAVGGYAVVNLPIEAFPDVQDVQVNIVTQAPGLAPEE
VERSISLPIEREMNGVPRMTQLRSVSITGLSIVTLTFADNTDDYFARQQVTEKLQNVVLP
PGAQPGLAPLTTAVGEIYRYVFEAPADMPLHEVRALQDWVVRPALRRVTGVADVVSFGGA
VKEYQVRIDPARLRKFAVSIDQVSQALASNNANAGGGIMRRGDEALVVRSIGLLSKVDDI
ARVTVAVRDGKPILVGDVARVEIGPRTRSGIVSFNERDDVVQGIVQMSKGQNAIKVSAAL
KEEMARVGERLPAGVRLVPIYDRIELVKHTVHTVSENLLVGAVLVVGILILFLRSWFAAA
VVAVVIPLSLLTAFVMMHTKGVAANLISLGAVDFGIIIDGAVVLVEALMVRLAMGEPEKN
PLHGTLQWRMLTLKHTAIEMGHPIIFSKAIIILAFLPIFTFERVEGKIFAPMAYTLSFAI
IGAILLTLTLTPALTSFYLKQHNLAEKHLDWMHRLQGRYRDLMQWADGRRRQIVVGSGLI
LALSLALVPHLGSEFLPKLDEGNIWLTVTLPPATNLAKTKEVEQEVRRILLSYPEVSKVI
AHVGRPDDGTDPKGPNNMEILADLKPHNEWRFPSKEALIADMSGKIRAIPGVPTNFSQVI
EDNVQESISGVKGEIAVKIFGPDLDILEDKAEQVVGVLGAIHGAADVAAIKVSGQTELDI
TLDRERMARYGISAQDVNATVQTALAGSAVAVFYDGDRRFDIVVRLEKEYRDAVDDVADL
PIALPHSDHPSLADPGTIPLAAIASVEVRQGPARIAREAGGRYVAVKANLLGRDQGSFVA
EAMAKVKERVHLPNGYSMTWGGQFENQQRATKRLAVIVPLSVLGIFVLLFWAFRSMPFAL
LVLGMVPFTWVGGILGLAAAGLHMSVSAAVGFIAVAGISVQNGVIMVEQFLEGVRNGQSV
AVSVREGAVGRLRPILMTALMAGLGLLPAALSHGIGSETQRPFAVVIVGGIVSATIFTLI
LLPLLFPALCRTEEN