Protein Info for Dsui_3385 in Dechlorosoma suillum PS

Annotation: Protein of unknown function (DUF1504)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 422 signal peptide" amino acids 1 to 27 (27 residues), see Phobius details transmembrane" amino acids 50 to 70 (21 residues), see Phobius details amino acids 86 to 105 (20 residues), see Phobius details amino acids 124 to 152 (29 residues), see Phobius details amino acids 167 to 188 (22 residues), see Phobius details amino acids 208 to 228 (21 residues), see Phobius details amino acids 243 to 264 (22 residues), see Phobius details amino acids 270 to 286 (17 residues), see Phobius details amino acids 298 to 318 (21 residues), see Phobius details amino acids 329 to 350 (22 residues), see Phobius details amino acids 361 to 380 (20 residues), see Phobius details amino acids 399 to 420 (22 residues), see Phobius details PF07399: Na_H_antiport_3" amino acids 9 to 422 (414 residues), 635.2 bits, see alignment E=2.5e-195

Best Hits

KEGG orthology group: None (inferred from 65% identity to azo:azo2300)

Predicted SEED Role

"putative membrane protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See G8QKH6 at UniProt or InterPro

Protein Sequence (422 amino acids)

>Dsui_3385 Protein of unknown function (DUF1504) (Dechlorosoma suillum PS)
MSALAPTPVEIAATLLFAVAILHTFSTKYFEHLAHTQPAHAGLWHLLGEVEVVFGFWAMV
LVLVMVGLQGTGEAVAYLESCNYTEALFVFVIMVIAASRPILALAGHSVRAAARLLPLPD
SVATFFVILFLVPLLGSFITEPAAMTLGALLLRDRYFARPVSSRLKYATLAVLFVNISIG
GTLTPFAAPPVLMVAGKWGWDLAFMASTFGWKAAIAVGINALVVTFVYRRELVSLCGAVE
GEAAPAVPAGMVLVHLAFLVGVVVFAHHPAVFLGLFLFFLGFCEAYKHHQDRLILREGLL
VAFFLAGLVTLGGLQKWWLQDVLAGMAPTVLFFGATALTALTDNAALTYLGSLVEGVTPA
FQYALVAGAVTGGGLTVIANAPNPAGFSILKGTFHEQAISPIGLLLCALPPTLVSVLAFQ
LL