Protein Info for Dsui_3328 in Dechlorosoma suillum PS

Annotation: cytochrome c556

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 156 signal peptide" amino acids 1 to 23 (23 residues), see Phobius details PF01322: Cytochrom_C_2" amino acids 28 to 153 (126 residues), 122.2 bits, see alignment E=1.3e-39

Best Hits

Swiss-Prot: 58% identical to CYCP_ALLVD: Cytochrome c' (cycA) from Allochromatium vinosum (strain ATCC 17899 / DSM 180 / NBRC 103801 / NCIMB 10441 / D)

KEGG orthology group: None (inferred from 59% identity to app:CAP2UW1_2520)

Predicted SEED Role

"probable cytochrome c'"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See G8QJX9 at UniProt or InterPro

Protein Sequence (156 amino acids)

>Dsui_3328 cytochrome c556 (Dechlorosoma suillum PS)
MKKLPKLLLALSALAVAAGASAQVKPEDAIKYRKAGYSYMSWNMGKIKEQTIDNPAAYNK
DQVLAAARTIAAIANSGMGALYVPGSDKDAGGQKTRVKPEFFQQQEEVGKIARAFNAEAN
KLAEVAAGGDVNAIKAQFGKTGETCKSCHDKFRMKD