Protein Info for Dsui_3098 in Dechlorosoma suillum PS

Annotation: alkylated DNA repair protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 220 PF13532: 2OG-FeII_Oxy_2" amino acids 24 to 216 (193 residues), 200.2 bits, see alignment E=2.1e-63

Best Hits

Swiss-Prot: 56% identical to ALKB_ECOLI: Alpha-ketoglutarate-dependent dioxygenase AlkB (alkB) from Escherichia coli (strain K12)

KEGG orthology group: K03919, alkylated DNA repair protein [EC: 1.14.11.-] (inferred from 62% identity to rso:RSc2568)

MetaCyc: 56% identical to DNA oxidative demethylase (Escherichia coli K-12 substr. MG1655)
RXN-21233 [EC: 1.14.11.54]; 1.14.11.54 [EC: 1.14.11.54]; RXN-18737 [EC: 1.14.11.54, 1.14.11.33]; 1.14.11.33 [EC: 1.14.11.54, 1.14.11.33]; 1.14.11.33 [EC: 1.14.11.54, 1.14.11.33]; 1.14.11.33 [EC: 1.14.11.54, 1.14.11.33]; 1.14.11.33 [EC: 1.14.11.54, 1.14.11.33]; 1.14.11.- [EC: 1.14.11.54, 1.14.11.33]; RXN0-7275 [EC: 1.14.11.54, 1.14.11.33]

Predicted SEED Role

"Alkylated DNA repair protein AlkB" in subsystem DNA repair, bacterial

KEGG Metabolic Maps

Isozymes

Compare fitness of predicted isozymes for: 1.14.11.-

Use Curated BLAST to search for 1.14.11.- or 1.14.11.33 or 1.14.11.54

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See G8QI29 at UniProt or InterPro

Protein Sequence (220 amino acids)

>Dsui_3098 alkylated DNA repair protein (Dechlorosoma suillum PS)
MSGTLDLFADLPPPPPHAERLGPGTVLLHGYALERAPALIAAVEGIIAASPWRQMITPGG
QTMAVSMSNCGPLGWISDRRGYRYVPLDPLSGQPWPPLPPLLLQLADEAATAAGFPGFVP
DACLINRYAPGTRLSLHQDRDEEDFSQPIVSLSLGLPAVFLLGGASRNDKTVKIPLLHGD
VLVWGGPDRLRFHGVQPVKDGNHALTGPCRLNLTLRRARR