Protein Info for Dsui_2944 in Dechlorosoma suillum PS

Annotation: diguanylate cyclase (GGDEF) domain-containing protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 570 transmembrane" amino acids 20 to 39 (20 residues), see Phobius details amino acids 302 to 322 (21 residues), see Phobius details PF00672: HAMP" amino acids 321 to 371 (51 residues), 39.9 bits, see alignment 4.2e-14 TIGR00254: diguanylate cyclase (GGDEF) domain" amino acids 404 to 563 (160 residues), 164.7 bits, see alignment E=7.6e-53 PF00990: GGDEF" amino acids 408 to 561 (154 residues), 158.6 bits, see alignment E=1.1e-50

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See G8QGU7 at UniProt or InterPro

Protein Sequence (570 amino acids)

>Dsui_2944 diguanylate cyclase (GGDEF) domain-containing protein (Dechlorosoma suillum PS)
MPVAGQQTMTFLPDSFRNRLALLFVGLALLVGLPTYLYLNHIYAAQLLRDRGGALRDLAS
AVAGVLGENLRERQREIELLAQSPLYRRAPLDSSDFRSSLERVQETYPQYSWIGLADAQG
TVRAATGGMLVGQSVVKRPWFINGRQGPFFGDLHEALLLTKLLPPAEGQGPVRFIDFASP
VFDEAGHLRGVLAAHAHWRWAAEVVQVMTPHDAATNGLDVFIVNQDNVVIYPDGQEKTLL
APDKAAFNPQSYTIDGWGDAISYLTATAPVREFIAGQSLGWRIVVRQPITRTLADVRHLQ
RVVLLSLAAATILFLALVWWSATRFSRPLERLAALAHRIEAGEEKTRLEVADAPQEIRGL
AAALQDMADALLSHQEALAQSNAQLEEKVSERTAALAQANAELHQLARRDALTGLANRFA
ANERLQDEFLRMRRHGGSYGLLMLDIDFFKRINDTLGHAGGDEVLRHVAATLRTLVRESD
FIARVGGEEFMVILPESSLADAARVGEKIRAGIAASQPPIDRQVTVSVGVALATPEQEDM
DLAVRQADTQLYRAKEAGRNRVAGGPQSAT