Protein Info for Dsui_2781 in Dechlorosoma suillum PS

Annotation: PAS domain S-box

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1200 1288 PF00072: Response_reg" amino acids 7 to 110 (104 residues), 48.8 bits, see alignment E=4.1e-16 amino acids 1023 to 1135 (113 residues), 86.8 bits, see alignment E=6.1e-28 TIGR00229: PAS domain S-box protein" amino acids 142 to 264 (123 residues), 34.1 bits, see alignment E=1.3e-12 amino acids 268 to 387 (120 residues), 44.9 bits, see alignment E=6.1e-16 amino acids 390 to 510 (121 residues), 50.7 bits, see alignment E=9.3e-18 amino acids 584 to 653 (70 residues), 24.7 bits, see alignment 1e-09 PF00989: PAS" amino acids 143 to 255 (113 residues), 23.4 bits, see alignment E=2.8e-08 amino acids 392 to 500 (109 residues), 30.8 bits, see alignment E=1.4e-10 PF08447: PAS_3" amino acids 165 to 253 (89 residues), 63.4 bits, see alignment 1.1e-20 amino acids 300 to 376 (77 residues), 43.3 bits, see alignment 2e-14 amino acids 575 to 641 (67 residues), 30.2 bits, see alignment 2.4e-10 PF08448: PAS_4" amino acids 314 to 382 (69 residues), 34.3 bits, see alignment 1.3e-11 amino acids 400 to 504 (105 residues), 58.2 bits, see alignment E=5e-19 PF13188: PAS_8" amino acids 391 to 447 (57 residues), 27.9 bits, see alignment (E = 9.5e-10) PF13426: PAS_9" amino acids 402 to 502 (101 residues), 34.7 bits, see alignment 9.9e-12 PF00512: HisKA" amino acids 670 to 734 (65 residues), 71.5 bits, see alignment 2.6e-23 PF02518: HATPase_c" amino acids 781 to 891 (111 residues), 103 bits, see alignment E=7.4e-33 PF01627: Hpt" amino acids 1194 to 1273 (80 residues), 31.6 bits, see alignment 8.5e-11

Best Hits

Predicted SEED Role

"diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s)" in subsystem Bacterial hemoglobins

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See G8QQ20 at UniProt or InterPro

Protein Sequence (1288 amino acids)

>Dsui_2781 PAS domain S-box (Dechlorosoma suillum PS)
MLSPLHILVIEDMASDYLLLARSLSHGEIPVETRHVGNVDELNEALEDRHWDVVLCDYSI
PGLSFEDAFHLIRRRQPEVPVIVVSGSLMDEDAVDLLRLGASDFVLKDRLARLMPAICRS
IEESEEKQRRQRIERELEIVWERLDLALTATNDGLWDWDLSSNALYLSPRWFTMLGYGEN
EYPCSLETWRQFIHPDDLTRAMAILSDATGATGRERIEQVLRMRSKDGTWHDVLCRAMAI
RNDGQVRRIIGTNTDVTAISQAQHQSLQTEARYKALVEASAQIVWSCNARGEIFEDSPSW
QAYTGSSMADGDLRLASIHPEDKEELARRWRQALSQNSILEMDHRLRHHSGQWRWTHCRA
VPLRLANGRIGAWVGMNIDIHDKKLAELNQQRYEQLVLNAGDGLAIYDRDLRVCLCNREF
AEFLGHTPESIRGLALQELLPADRFEKALPHLQAALQGQSVRFQLSVDRPSRGTYHISLR
YQPLMQNGQIDGIVASLTDVSELKQAEQALRQTQVELEQHRDKLEQLVESRSAELRASEA
RLRLAIAAAGLGAWEYDPELECHLPALSGNTLFDLHQGSFAEFLQAIHPEDREAMAQAMG
QALHTEGRHLFEYRVLQQGTCRWVADTFDVQRRQGRLQVVGTLQDITERRQADATREAAR
EAAEQLARIKSEFLANMSHEIRTPLNAILGFAQLGQRETPESRARIGFQRIHDAGQHLLG
IINDILDFSKIEAGKMKLEMQPTNPCEVVDHVVKLMAASVFQKGLELRVEESDNLPAAFD
GDSLRLAQVLLNLLGNALKFTDQGSITLREERDGQDLIYSIRDTGIGMNREQLGRLFHAF
EQGHGGASRRFGGTGLGLTITKRLVEMMGGSIEVESTPGQGTCFSIRIPMHNVVEAQPSP
PLQVGLLGFEQEDRRQLAATLAAYGISTAIIGGDAATTPSGLALVVADVKVEPALLGRLL
QRGERVAVLHQPGCLPPPSPLAPELQYLERPLRACHVESLALGQCAAGTTAADPQRRLGG
IAILIAEDNQANRLVLRELLESEGASIVCVENGLEAVETLQRRGPQDFQLFLTDVQMPVM
DGYTAAREVSRQYPELPIIGVTANVTLEDRQNCLNAGMVDHVGKPYQLDALVEAILRVVR
SDARPSPLWQAPPNPLPTPTTPPPPPASDLDSDAIDWPQLRSRLGVKPGLMERFLRLFLE
SNGRLPDELRDLACNPDLERLRRLGHALYGSAANLAAVPTATLARRLEYAAAAGEPESAV
LAGELADQLERLFATIHQYLDQLQENAP