Protein Info for Dsui_2730 in Dechlorosoma suillum PS

Annotation: Sua5/YciO/YrdC/YwlC family protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 207 TIGR00057: tRNA threonylcarbamoyl adenosine modification protein, Sua5/YciO/YrdC/YwlC family" amino acids 8 to 200 (193 residues), 184.7 bits, see alignment E=6.1e-59 PF01300: Sua5_yciO_yrdC" amino acids 22 to 198 (177 residues), 153.5 bits, see alignment E=2.2e-49

Best Hits

Swiss-Prot: 52% identical to Y1198_HAEIN: Uncharacterized protein HI_1198 (HI_1198) from Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)

KEGG orthology group: K07566, putative translation factor (inferred from 77% identity to dar:Daro_2461)

Predicted SEED Role

"Hypothetical YciO protein, TsaC/YrdC paralog"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See G8QPX0 at UniProt or InterPro

Protein Sequence (207 amino acids)

>Dsui_2730 Sua5/YciO/YrdC/YwlC family protein (Dechlorosoma suillum PS)
MAEYLSLHPDNPQPRMLAKAAQVLREGGLIAFPTDSCYSLACHLGDKEALDRLRAIRGVD
DRHHMTLMCRDLSQIAHFARVDNAQYRLLKTVTPGSYVFILEGTKELPRRVMHPKRKTIG
LRVPDHLGALALLEEFGEPLLTATLQLPGDEAPLTEGWEIQDRLDDQLELILDGGHCGTE
PTTVIDLTSGAPELVRAGRGALAPFGL