Protein Info for Dsui_2648 in Dechlorosoma suillum PS

Annotation: site-specific recombinase XerD

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 427 PF00589: Phage_integrase" amino acids 135 to 295 (161 residues), 45.9 bits, see alignment E=2.8e-16

Best Hits

KEGG orthology group: None (inferred from 52% identity to pol:Bpro_2511)

Predicted SEED Role

"Mobile element protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See G8QP97 at UniProt or InterPro

Protein Sequence (427 amino acids)

>Dsui_2648 site-specific recombinase XerD (Dechlorosoma suillum PS)
MSQVDLYLNAAARANTRRSYASAIQHFEIEWGGLLPATIDSVARYLAAYAESLSLNTLKH
RLAALSRWHQDHGFPDPTKAPKIRQLLKGIRTLHPAQEKRAKPLELEILRGVADWLTSAT
AAAISRGDLTSALRHTRDQALVLLGFWRGFRSDELANLRIEFIEIKPGEGLTCFLPRSKG
DRNLEGRSYSCPALSRLCPVEAVEDWLALSKLTGGPLFRKVDRWGHLSEVELTPSSIIPM
LRKLLSRAGVADAETFSSHSLRRGFAQWAGMSGWDIRELMSYVGWRDVKAAMRYLDGVST
DQKARFEQGLDRALPETATASTPQLPSLPEVPLAMIEVSIDLSAFNGGRRGVANALRDMT
NTCLAQFQAQPLDQDGRRYQISVPTPSTDTLDEHLYTLLDELHRIADARECFLEAVCRDP
ATGRHWD