Protein Info for Dsui_2277 in Dechlorosoma suillum PS

Annotation: Rhs element Vgr protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 800 850 900 941 TIGR03361: type VI secretion system Vgr family protein" amino acids 31 to 576 (546 residues), 397.6 bits, see alignment E=8e-123 TIGR01646: Rhs element Vgr protein" amino acids 43 to 582 (540 residues), 319.8 bits, see alignment E=3.7e-99 PF05954: Phage_GPD" amino acids 45 to 375 (331 residues), 251.4 bits, see alignment E=2.4e-78 PF04717: Phage_base_V" amino acids 454 to 528 (75 residues), 50.9 bits, see alignment E=3.2e-17 PF13296: T6SS_Vgr" amino acids 555 to 662 (108 residues), 129.1 bits, see alignment E=1.6e-41 PF10106: DUF2345" amino acids 714 to 866 (153 residues), 164.1 bits, see alignment E=4.2e-52

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See G8QKF7 at UniProt or InterPro

Protein Sequence (941 amino acids)

>Dsui_2277 Rhs element Vgr protein (Dechlorosoma suillum PS)
MSARDNLSDLLSSYASAFVQESRLLELRVLGVGSEELLPVEARGEESVSGDYRVEVGCLS
PDTHLELKQLIGRIAELNLLLADGGHKTISGLIAEARHEGADGGFSRFALVIVPGLSLLT
HRTNSRVFQDKSVPEIVHTLLSEHRDAGGPWAAACRWQNRLAKDYPQRSYCLQYRESDRD
FIRRLLAEEGIATRYEFQEEDSSGQRQDDATPLHTLVLFDDPYEPTPAQQEKIRFHRADA
SEEADSLTAWDTARRLRSGKSQLLAWDYKPVTPLQADAPGTTDQGEQGGQVESRLEAYDP
QAHYYGADNDDLSRYTQLRQDSRDRAAKDYQGQSSVRGLTAGQWFQLEDHPRHEGEDDDS
RRFLVRHLNWHARNNLPGDLTDGLPGLLASAAGQHGTASDAAGATGDQPYRNTFTAVRRD
TPIAPDYAPYQKPTAKGPQTATVVGPQGEEIHTDDLGRIKIQFHWAREQDHPDGGAALDD
RSSCWIRVAVPWGGANWGHQYLPRIGQEVLVEFLEGDIDRPVVMAGLYNGSHRPPTYSGA
GSLPANRTLAGIKSKEYKGNGYNELLFDDSTGELRAKLSSEHGKTQHNQGYLIHPRSEGK
GQPRGEGFEQRTDKAGAIRAAQGLLLSTEAKAGASGKQLDREGAQGQLDAAFALAQSLAD
SAAQQNADKTETGKGRQDAEGKAKAKGTQWHLKQALAAWEKGSNTDPEHKGGAKEQPDEA
GQQPILVASAVAGIGITTPQSATFATGQNFDQVSARDTNQSTARRWIHNVGQSISLFVQG
IKDKTAIKLYAARGKVDVQAQSDSIEITGDDSLTVISSDDRIFANAKEHITFACGGAYIK
IAGGNIDIHCPATASFKAGDYKIEGPTSLAQEMNSWPDGKFDEGFVLQQENGKPVVNRRF
EIIRENGTKLRGQTDAQGQTGLQKSLFLENVTVRILPENSQ