Protein Info for Dsui_2164 in Dechlorosoma suillum PS

Annotation: signal transduction histidine kinase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 682 transmembrane" amino acids 20 to 43 (24 residues), see Phobius details amino acids 277 to 293 (17 residues), see Phobius details amino acids 299 to 320 (22 residues), see Phobius details PF22588: dCache_1_like" amino acids 198 to 283 (86 residues), 30.6 bits, see alignment E=4.8e-11 PF00512: HisKA" amino acids 367 to 432 (66 residues), 65.6 bits, see alignment E=5e-22 PF02518: HATPase_c" amino acids 479 to 593 (115 residues), 93.7 bits, see alignment E=1.5e-30

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See G8QJQ6 at UniProt or InterPro

Protein Sequence (682 amino acids)

>Dsui_2164 signal transduction histidine kinase (Dechlorosoma suillum PS)
MNAPAKISAVEAPGADMPRWLPHALVALIIATLVVSLAAMAIWEERIRYRERAEVATQNV
SHMLDLHLSSVFDKIDVVLQSTVTQYQEQLAGGKVRPLELKLYLERQQALVPEIISLRII
DRDGVVRYGAGIPGGGPVNLGDREYFLRARDGSASELIIAGPLMGRIAKQWVVTLSRRIE
APDGTFAGVVYAAIPTIHFERILASVSLGPQGAASIRTADLALVHRYPSTRNAVGSREVS
QELLDMLRRHPTDGQYLARTSLDGVERNNAYRRLESYPFYVIVGMASRDYLGGWQEHSLI
LGGLAALAVLAIGLAAWLMYRSAERLRADLAVRKRIGAELETLLEERTRLATELAERADE
AEAANRAKSTFLAKMSHELRTPLNHIMGFTTILQREVQGPRGQDHLHKVEQASQRLLELI
NSILDVSSIESGKITLALRDFGLAELLEEARQGLAEAAAAKGIGVQVVSDPALPARLQGD
PERIRQVLNGLLDNAIKFSEQGPVILRAHRVPSDDGNVRVRFEVSDQGIGVAPELRDNLF
QIFNQGDNSSTRRYGGAGLGLALCKRLVALMLGEIGCTSTPGDGSTFWFTLPLGAVDENP
GVLGAGDWQRVRHVLAELEALLAADNFQAQTLWKRYTPLLHAALGPGARACDEAIDSIDF
DTALRCLREARRAVPELRDPAH