Protein Info for Dsui_2125 in Dechlorosoma suillum PS

Annotation: PAS domain S-box

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 800 850 900 950 994 PF08448: PAS_4" amino acids 30 to 152 (123 residues), 39.7 bits, see alignment E=2.8e-13 amino acids 620 to 729 (110 residues), 46.8 bits, see alignment E=1.7e-15 PF00512: HisKA" amino acids 215 to 280 (66 residues), 51.7 bits, see alignment 4.2e-17 amino acids 760 to 823 (64 residues), 47.4 bits, see alignment 9.2e-16 PF02518: HATPase_c" amino acids 326 to 435 (110 residues), 104.4 bits, see alignment E=2.7e-33 amino acids 868 to 978 (111 residues), 76.6 bits, see alignment E=1.1e-24 PF00072: Response_reg" amino acids 483 to 593 (111 residues), 87.4 bits, see alignment E=4.1e-28 TIGR00229: PAS domain S-box protein" amino acids 608 to 733 (126 residues), 111.4 bits, see alignment E=1.6e-36 PF00989: PAS" amino acids 613 to 724 (112 residues), 49.4 bits, see alignment E=2.4e-16 PF13426: PAS_9" amino acids 625 to 724 (100 residues), 41.5 bits, see alignment E=7.7e-14 PF14598: PAS_11" amino acids 629 to 729 (101 residues), 27 bits, see alignment E=2e-09 PF08447: PAS_3" amino acids 637 to 719 (83 residues), 56.4 bits, see alignment E=1.6e-18

Best Hits

Predicted SEED Role

"sensory box histidine kinase"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See G8QJ77 at UniProt or InterPro

Protein Sequence (994 amino acids)

>Dsui_2125 PAS domain S-box (Dechlorosoma suillum PS)
MSSPTEAGNATSRTPREHSFAPPDFQALFECIPTPCLALDPELRVIAVSSAYTEATLTRR
EDMLGRDMFDIFPDNPDDPAADGVHNLRASLERVLQTGQPDLMPVQKYDIRRPPEQGGGF
EVRYWTPINTPVLDAEGRLRYIIHKAEDVTEFVMLREQKLEQSRITDSLRQQAEKMEADI
YARSKTIAENNLRLHQANAELARLYEKTRELDELKTQFFANISHELRTPLTLILGPVGKH
LADPDLAPALRRDLEVVERNARMLYRHVNDLLDVAKLEAGRMVMHYTEGDLAHLTRVIAS
HFDSLAEGRRVRYVVTTPPDLTAQVDAEKYQRILLNLLSNAFKFAGDGGAIQLRLTAAGG
QARIEVEDNGPGIPEAMREQVFEPFRQVEGGSSRHHGGTGLGLAIVRELAQLHGGSVRID
AAPSSGALFTLELPLLAPPGTQLQAQGEALPGDLSRQALEELQPPPALPEHRQGRADAAL
PLVLVVEDNPDMNAFICEALGRHYRVASARDGQEGLEMACRQTPDLIVSDVMMPRLSGDR
MVQALRQEPALAGVPVVILTAKADEDLRIRLLQDSVQDFLNKPFSVEELLARVSSLLTER
LQAADLLRQSEKRFRATFSQAAVGMAHVAPDGRWLLVNQRLCDIIGYPREELLGRTFQEI
THPDDLYSDLEQMHRLLAGEIDSYAMEKRYRHRDGHLVWINLTVSLVRAADGSPEYFIAA
VEDIQRRKEAEGEIHRLNADLERRVEERTAELRAANRELDSFAHAVSHDLRAPLRAITGF
SRAIIEDHGTALPAEAREFLDHIIASGQQMGALIEGLLTLSRSSREELRRDDIDLSALAR
RILEELARSEPGHRVAWQVEDGLVARGDIRMIGVVLRNLLGNAWKYTARTAAPLIRVHAR
RQEKQIQFCIADNGAGFDMAQVGKLFQPFQRLHRQDEFPGIGIGLATVQRVVHRHGGSIE
ARGEAGHGASFCFTLPLPENEPAPPAPSTPAAPG