Protein Info for Dsui_2104 in Dechlorosoma suillum PS

Annotation: DNA replication protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 244 PF01695: IstB_IS21" amino acids 8 to 241 (234 residues), 275.2 bits, see alignment E=4.6e-86 PF00308: Bac_DnaA" amino acids 96 to 197 (102 residues), 28.5 bits, see alignment E=1.4e-10

Best Hits

Swiss-Prot: 36% identical to ISTB_GEOSE: Insertion sequence IS5376 putative ATP-binding protein from Geobacillus stearothermophilus

KEGG orthology group: None (inferred from 72% identity to gca:Galf_2409)

Predicted SEED Role

"Mobile element protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (244 amino acids)

>Dsui_2104 DNA replication protein (Dechlorosoma suillum PS)
MLAELTQTLKALHLYGMATALSELQAERPRHAPSPEIWLKRLIEAEQVDRQTRSLKYQLR
VAKFPLHRDFTGFDWRETALQEAQVQQLATGAFMDSAHNLILVGGTGTGKTHCAIALGVA
AIHAGKRVRFYNVVDLVNQLEREKAQGRSGHLARHLTQMDAVILDELGYLPFPEAGGALL
FHLISQLYERTSLIVTTNLAFSEWVQIFGDAKMTTALLDRLTHHCDILETGNDSYRFKHR
NTPR