Protein Info for Dsui_2094 in Dechlorosoma suillum PS

Annotation: putative autotransporter protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1200 1254 TIGR04393: T5SS/PEP-CTERM-associated repeat" amino acids 141 to 182 (42 residues), 36.8 bits, see alignment (E = 1.6e-13) amino acids 185 to 232 (48 residues), 25.7 bits, see alignment (E = 4.3e-10) amino acids 236 to 281 (46 residues), 28 bits, see alignment (E = 8.9e-11) amino acids 284 to 332 (49 residues), 49 bits, see alignment (E = 2.4e-17) amino acids 336 to 390 (55 residues), 31.6 bits, see alignment (E = 6.3e-12) amino acids 393 to 438 (46 residues), 38.6 bits, see alignment (E = 4.1e-14) amino acids 441 to 489 (49 residues), 55.4 bits, see alignment (E = 2.3e-19) amino acids 491 to 541 (51 residues), 39 bits, see alignment (E = 3.2e-14) amino acids 544 to 591 (48 residues), 41.7 bits, see alignment (E = 4.4e-15) amino acids 593 to 640 (48 residues), 48.2 bits, see alignment (E = 4.3e-17) PF03797: Autotransporter" amino acids 983 to 1222 (240 residues), 151.3 bits, see alignment E=2.2e-48

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See G8QJ47 at UniProt or InterPro

Protein Sequence (1254 amino acids)

>Dsui_2094 putative autotransporter protein (Dechlorosoma suillum PS)
MNKYLPVKQARRGPLCAFVPERRKTLAAAIQACFGADSRRWLATLCLSLGMPAAQAVNGN
WNGSVSSDWATAGNWAWSGAVPTAGDDALVSVATGNTPIIGSATAAHANTVVVGGGSNGI
LTILGTLNSASGLLGNNLGTPTTSGSVTVSGSGANWSNSGDLHIGNYGVGVLNVQGGASL
SAGNFYLGSTSGTNGSLILSGSGSTATSGGYAFIGNSGTGTLNVGSGTTLTSASGGVLGL
YGGSSGTATINGTWNMGSGNLVVGSGGQGNLTISAGGDVSNAVGSIGSASNGLTSSVTVI
GTGSSWTNSDRLFVGVYGKGQLDILSGATVSSGDTALARYAGSTGTVNVSGAGSSWGIGG
SLRVGGDITDAANPGGTGTLNISNGGLVTSSAGSIGDSQNAVGSVTIDNAAWNISGRLGV
GNFGKGTLTVQNGGTLTSTGGLVGWQSSSTNNSVLVTGTGSTWTMSGHLYVGNEGQGTMT
ISAGGKVTNVDGFIGTVGNGVSEVTVTGSGSQWENQGDLLVGQSSGGKGKLTIGNGATVT
SVQAILGDLAGTTGTAVITGSGSSLTASGDFNVGRFGTGSLTLGSGGTLSSDRGYVANEA
GSTGTVLISGSGSGWTTTGTLHVGSRGDGSLVLSDGGDITAGSLVIAHSAGSTGTLSIGA
EEGSAAAAAGTIHSGSITLGAGDGTLVLNHTDSNYQLSSVIAGTGDIKVLGGTTVLTAVN
TFTGSTSIASGAGLSLADSAALGGNVTVAHGGTLTVGQSNVGGNISNSGTLSVPEQSGSY
KIFSVGGNYTQAGNGTLRLGVNGTGAGQYSQLSVTGSASLNGTLAVDVASGSPLTLGDRL
NSVITATGGVSGQFSSISDNSTLFNLRAVYGSNDVDLLLVAASNNAVSSALQSTGNSQGG
GAGAVLDALIAQNPTSQLSLMFAPLTSASEVSRAVSQSLPLLTGNNVLASQSVIANVGQL
INNRVAAVTGMASGDSQFADRQFWIKPFGSRATQADSNGSAGYHASTAGMVFGLDGQVSD
ADRLGVALAYADASVDNRSAVAPHNASVKLYQLIGYGSRNLAPGTELSWQVDGGYNSNRG
TRDIRFAGVSAHSKFDTYTAHAGLRLTRNLTLSERTVVAPSVGLDYTWMRNASYQESGAG
ALNLQVKRQDVEQILLSADARLSHRLDNGINLLANLGAAYDLRNQQAAVTAAYAGAPGSY
FITNGVESDPWIIRAGLGLSKLTAGGLEIIGRIDGEHRQGFNNRSASVNLRWAF