Protein Info for Dsui_2086 in Dechlorosoma suillum PS

Annotation: cytochrome c

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 696 signal peptide" amino acids 1 to 43 (43 residues), see Phobius details PF00034: Cytochrom_C" amino acids 49 to 147 (99 residues), 30.6 bits, see alignment E=1.4e-10 amino acids 330 to 414 (85 residues), 34.1 bits, see alignment E=1.2e-11 amino acids 584 to 670 (87 residues), 34.2 bits, see alignment E=1.1e-11 PF13442: Cytochrome_CBB3" amino acids 330 to 410 (81 residues), 23.7 bits, see alignment E=9.6e-09 amino acids 584 to 669 (86 residues), 26.5 bits, see alignment E=1.4e-09 PF21342: SoxA-TsdA_cyt-c" amino acids 486 to 553 (68 residues), 44.4 bits, see alignment E=2.6e-15

Best Hits

KEGG orthology group: None (inferred from 78% identity to dar:Daro_2492)

Predicted SEED Role

"Putative diheme cytochrome c-553" in subsystem Soluble cytochromes and functionally related electron carriers

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See G8QJ39 at UniProt or InterPro

Protein Sequence (696 amino acids)

>Dsui_2086 cytochrome c (Dechlorosoma suillum PS)
MTHVPSVPAGAPAGALTRLWRSAAATFLLSALAAAGLGRAEAADAGQIARGEYLARLGDC
VACHTAEGGKSMAGGRELATPFGVLFSTNITPDKETGIGNYTFAQFDRAMRKGVAADGHN
LYPAMPYPSYAKMTGEDMQALYAYLMQGLAPVKQANKPTAMRWPFNQRWGLSLWNWAFLD
ATPFQPDAGKDATWNRGAYLVQGLGHCGACHTPRGIAFQEKAMSDAGSKGKHFLAGETVE
SWRALSLRGLWTVEDTALFLKTGQNRFATASGNMAEVIHHSTQHVKDEDLVAIATYLKSL
PPGEHELPAPSVPRSEVAGKVPGNLFSSRGGLAYVQFCGDCHRQDGNGVSKIFPPLAGNP
AVTAKDPATLLHITLTGWKTASTAAHPRVFTMPGFARLNDQELAELITFVRSSWGNGGEA
VTASQVKKMRAEVVKQDPKAIDNSKFETPRLADMLAKPNAEQLVRGMRLHLETKDLLPNH
VGDQLNCTSCHLNAGTVADGSPFVGVSAFFPSYAPRAGRIITLEDRINGCFKRSMNGKPL
PVESADMKAMVAYFDWMKGATKPEDKVPGRGIGKIDRSLKPDSDNGKKIYAEQCAVCHGE
NGEGLKSADGKMVYPPLWGDESFNIGAGMARTYTAAAFVKRNMPIGFHGKFPLGQGGLSD
QEALDVAEYFSHQPRPDFPEKVKDWPNGKKPEDARY