Protein Info for Dsui_2068 in Dechlorosoma suillum PS

Annotation: ABC-type metal ion transport system, ATPase component

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 278 PF00005: ABC_tran" amino acids 31 to 178 (148 residues), 120.7 bits, see alignment E=7.6e-39

Best Hits

KEGG orthology group: K02071, D-methionine transport system ATP-binding protein (inferred from 62% identity to cvi:CV_2295)

Predicted SEED Role

"Methionine ABC transporter ATP-binding protein" in subsystem Methionine Biosynthesis or Methionine Degradation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See G8QIM7 at UniProt or InterPro

Protein Sequence (278 amino acids)

>Dsui_2068 ABC-type metal ion transport system, ATPase component (Dechlorosoma suillum PS)
MTTQNTDSPALALRGVSKSFRTPDGQQVGVHPTDLDVAPGEIHGIIGFSGAGKSTLLRLA
NLLERPDAGQVVVHGQDLMTLSPADLRTARQRIGMIFQHFNLLHNRTVADNVAFPLRIAG
ADEARINERVKTCLEFVGLSEKAGVYPAQLSGGQKQRVAIARALAPEPHVLLADEPTSAL
DPRTTQSLLEVLADVNRRLGVTILLVSHEMGVIRRLCHRVSVMEAGQIVERLTIANGRIP
PDSQLAQWLREYGDAEGDAEEAAADPAPQHLLSEAAHG