Protein Info for Dsui_1987 in Dechlorosoma suillum PS

Annotation: putative permease

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 257 transmembrane" amino acids 7 to 27 (21 residues), see Phobius details amino acids 30 to 50 (21 residues), see Phobius details amino acids 71 to 91 (21 residues), see Phobius details amino acids 103 to 121 (19 residues), see Phobius details amino acids 143 to 175 (33 residues), see Phobius details amino acids 188 to 200 (13 residues), see Phobius details amino acids 203 to 204 (2 residues), see Phobius details amino acids 210 to 231 (22 residues), see Phobius details amino acids 238 to 256 (19 residues), see Phobius details PF01925: TauE" amino acids 6 to 254 (249 residues), 177.2 bits, see alignment E=2.3e-56

Best Hits

KEGG orthology group: K07090, (no description) (inferred from 76% identity to app:CAP2UW1_1973)

Predicted SEED Role

"Putative sulfate permease"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See G8QI05 at UniProt or InterPro

Protein Sequence (257 amino acids)

>Dsui_1987 putative permease (Dechlorosoma suillum PS)
MDWLYTLSGFVVGAIVGLTGVGGGSLMTPLLVLLFGIHPATAVGTDLLYAAVTKAGGTVV
HSRKGHVEWRIVGLLAAGSMPATAVTLYILAHLPKQGPETTGLISLCLGIALLLTACAII
FRKKLQSYALSHETSFVQRHQTPITIAVGATLGVLVSISSVGAGALGVAALFFLYPKLPA
VRIVGSDVAHAVPLTLVAGTGHWLMGSVDWQLLTALLIGSLPGIWVGSHISAKVPDKILR
PILATMLVLIGAKLIAH