Protein Info for Dsui_1918 in Dechlorosoma suillum PS

Annotation: TIGR03549 family protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 737 TIGR03549: YcaO domain protein" amino acids 2 to 732 (731 residues), 1463.2 bits, see alignment E=0 PF02566: OsmC" amino acids 32 to 126 (95 residues), 38.7 bits, see alignment E=1.7e-13 TIGR00702: YcaO-type kinase domain" amino acids 159 to 551 (393 residues), 326.7 bits, see alignment E=2e-101 PF02624: YcaO" amino acids 205 to 540 (336 residues), 219.1 bits, see alignment E=1.4e-68 PF18381: YcaO_C" amino acids 557 to 732 (176 residues), 236.9 bits, see alignment E=2e-74

Best Hits

KEGG orthology group: K09136, ribosomal protein S12 methylthiotransferase (inferred from 88% identity to lhk:LHK_01283)

Predicted SEED Role

"FIG00963002: hypothetical protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See G8QHE7 at UniProt or InterPro

Protein Sequence (737 amino acids)

>Dsui_1918 TIGR03549 family protein (Dechlorosoma suillum PS)
MEIKVNFLDKLRLEAKFDDFTVIADQPIRYKGDGSAPGPFDYFLASSALCAAYFVKLYCE
TRGIPTENIRLSQNNIVDPENRYQQTFKIQVELPADISEKDRLGILRSIERCTVKKVVQT
GPEFIIEEVENLDADAQALLTVKPDAGHQTYIPGKDLPLEQTIANMSAFLAGLGIKIEIA
SWRNLVPNVWSLHIRDAHSSMCFTNGKGASKESALASALGEYIERLSCNHFYTHQFWGEE
IANAPFVHYPNERWFKPGKKDALPKEILDEYCLEIYNPDGELRGSHLIDTNSGNVQRGIC
CLPFVRQSDGEVVYFPSNLIDNLYLSNGMSAGNTLAEAQVQCLSEIFERAVKREILEGEI
ALPDVPAEVLAKYPGIVAGIKGLEEQGFPVLVKDASLGGQFPVMCVTLMNPRTGGVFASF
GAHPSMEVALERSLTELLQGRSFEGLNDLPRPTFESQAVTEPNNFVDHFIDSSGVVSWRF
FSAKADYDFVEWDFSGHGEESNAHEAATLFGILEEMGKEAYLAVYDQLGVTACRILVPGY
SEIYGVEDLIWDNTNKALAFREDILNLHRLSDKQLAALLQRLEESELDDYTDIIGLIGVE
FDENTVWGQLTILELKLLIHLALGQLAEAHDLVGAFLQFNENTVDRGLFYQAMNVVLEVV
LDKDEGGDLDLADYEANFRRMFGNERMDAVIGSVQGTLRFHGLTPISMKLEGLDRHQRLI
DSYKKVHAARAKVAAGG