Protein Info for Dsui_1865 in Dechlorosoma suillum PS

Annotation: PAS domain S-box

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1026 PF00989: PAS" amino acids 162 to 258 (97 residues), 41.8 bits, see alignment E=4.8e-14 amino acids 281 to 389 (109 residues), 42.3 bits, see alignment E=3.5e-14 PF13426: PAS_9" amino acids 163 to 265 (103 residues), 56.9 bits, see alignment E=1.1e-18 amino acids 290 to 391 (102 residues), 33.8 bits, see alignment E=1.8e-11 TIGR00229: PAS domain S-box protein" amino acids 163 to 273 (111 residues), 66.1 bits, see alignment E=1.7e-22 amino acids 276 to 398 (123 residues), 54.2 bits, see alignment E=7.9e-19 PF08448: PAS_4" amino acids 164 to 267 (104 residues), 34.2 bits, see alignment E=1.3e-11 amino acids 284 to 394 (111 residues), 62.5 bits, see alignment E=2.1e-20 PF13188: PAS_8" amino acids 165 to 196 (32 residues), 17.6 bits, see alignment (E = 1.4e-06) amino acids 280 to 336 (57 residues), 19.1 bits, see alignment 4.9e-07 PF08447: PAS_3" amino acids 174 to 259 (86 residues), 53.2 bits, see alignment E=1.5e-17 PF13596: PAS_10" amino acids 283 to 389 (107 residues), 25.1 bits, see alignment E=1.1e-08 PF00512: HisKA" amino acids 412 to 477 (66 residues), 79.8 bits, see alignment 6.2e-26 PF02518: HATPase_c" amino acids 524 to 639 (116 residues), 110.8 bits, see alignment E=2.5e-35 PF00072: Response_reg" amino acids 796 to 910 (115 residues), 85.5 bits, see alignment E=1.5e-27 PF01627: Hpt" amino acids 952 to 1019 (68 residues), 43.1 bits, see alignment 2.1e-14

Best Hits

Predicted SEED Role

"diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s)" in subsystem Bacterial hemoglobins

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See G8QH96 at UniProt or InterPro

Protein Sequence (1026 amino acids)

>Dsui_1865 PAS domain S-box (Dechlorosoma suillum PS)
MHRLLLRQLKGSLGVAGEAELQPLCDKLLHLAAREDIAPDVAVALAGLPAFLRRVGEAYA
QAERDQALRTRSLELSSEDLNRAYARQEQELVAREQSIASLRETANRLLGQMGLPALSPE
DASLESLSQLMDTLVRERESSRIRLHQAHSSLEQQKFALDQHAIVSVTDVEGFIIEANDR
FCEISGYSREELVGRNHRVVKSGIHPPAFYQEMWDTIVHGRVWQGEVCNRSKDGRLYWVS
ATVVPFFDDLGVPYQYIAIRTDITARKLAEARLDEQLHFSRQVLDTLPVPLYFKDTQGRY
QGFNKAFADFFGIEPSLWIGRHVRDLLPPELAEQHVARDEEVFARGGRQSYEIELITPAG
ARYDTLYNKAALTRPDGSVRGLVGTIMDISERKRWEAEILRAKEAAENANRAKSDFLANM
SHEIRTPMNGVIGMTELALDTELTEEQRDYLEAVQMSANALLSIIDDILDFSKIEAGRLD
VELIPFDLEKVCADALRTVAVRADQKGLELLARRGPGVPRRLLGDPGRLRQILLNLLGNA
IKFTERGEIEVAVELAEPGAAGQVLYFCVSDTGIGIAPEKQEHIFEAFAQEDSSTTRRFG
GTGLGLTICSRLCELMGGRIWVDSVPGQGSAFHFTLQLPTDGAAAPEPERRLSGKPALLL
VVANARQRCRLQGLLASWGATVVAAASGAEGLALLEQGQWDGVVADSRPVDGDAGDLLEH
LARSPGRVPLLMLLSPSRMRQEIARCKALGVGHYLGKPALADELWRSLQALLEPAVAGVP
ATVAEAAGTPPAGLEVLLAEDHPVNQQLMRNMLERMGHRVTLARHGGEAVAAAARRRFDL
VLMDMQMPEMGGEQATRLIRADEQARGLAPLRIYALSAAARREDRQRGLVAGMDGYLLKP
LQQKDLQEVLAGLARPGQEEGGFDYGRMLEGADRDVLQIIGDVFPGLARLEMAAMEEALA
AADWERLGRVAHSLRGAAANFGPSPLVQQATEVERLAPHQAVQPAHLAELRLALEALLQG
LQQFDR