Protein Info for Dsui_1785 in Dechlorosoma suillum PS

Annotation: Tfp pilus assembly protein PilF

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 556 PF13432: TPR_16" amino acids 8 to 70 (63 residues), 29 bits, see alignment E=8.4e-10 amino acids 112 to 172 (61 residues), 38.7 bits, see alignment E=7.6e-13 amino acids 146 to 207 (62 residues), 38.6 bits, see alignment E=8e-13 amino acids 213 to 260 (48 residues), 18.4 bits, see alignment 1.7e-06 PF07719: TPR_2" amino acids 39 to 71 (33 residues), 25.1 bits, see alignment (E = 9.1e-09) amino acids 141 to 173 (33 residues), 28.1 bits, see alignment (E = 9.6e-10) PF13181: TPR_8" amino acids 40 to 71 (32 residues), 22.1 bits, see alignment (E = 8.5e-08) amino acids 108 to 138 (31 residues), 20.2 bits, see alignment (E = 3.5e-07) amino acids 142 to 173 (32 residues), 22.9 bits, see alignment (E = 4.6e-08) amino acids 210 to 241 (32 residues), 22.6 bits, see alignment (E = 5.8e-08) PF13174: TPR_6" amino acids 41 to 70 (30 residues), 13.3 bits, see alignment (E = 8e-05) PF13176: TPR_7" amino acids 108 to 140 (33 residues), 19.3 bits, see alignment (E = 6.5e-07) PF13414: TPR_11" amino acids 113 to 153 (41 residues), 32.3 bits, see alignment 4.4e-11 PF13424: TPR_12" amino acids 139 to 204 (66 residues), 35.3 bits, see alignment E=7.8e-12 amino acids 174 to 239 (66 residues), 38.4 bits, see alignment E=8.3e-13 PF00515: TPR_1" amino acids 141 to 173 (33 residues), 28.2 bits, see alignment (E = 8.2e-10) PF13374: TPR_10" amino acids 144 to 169 (26 residues), 17.5 bits, see alignment (E = 2.4e-06) amino acids 174 to 203 (30 residues), 23.7 bits, see alignment (E = 2.7e-08) amino acids 212 to 237 (26 residues), 16.9 bits, see alignment (E = 3.7e-06) PF14559: TPR_19" amino acids 150 to 206 (57 residues), 25.3 bits, see alignment 1.1e-08 PF13431: TPR_17" amino acids 162 to 195 (34 residues), 22.5 bits, see alignment (E = 6.6e-08)

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See G8QGN4 at UniProt or InterPro

Protein Sequence (556 amino acids)

>Dsui_1785 Tfp pilus assembly protein PilF (Dechlorosoma suillum PS)
MSRLDELLQQGQQRFSQGDMAGAEQAFAAAAQLAPQAWQVHFNLGMCRDRLGRREAAFTA
YEKAYQLAPDHVPCITNLAVNAFNLGKTEMALQLTLRQVELEPGNALAYDNLGQIFRQLG
QYEGAELSLRNALLLAPDTPNLHNNLGLILLDQNKLAEAEQAFLQALRLAPQHADAMTNL
STVLQAQGRTAEALEHCRRAAALAPRSAVTWTNLGNVLKSMGLHQEALEAQRQAIALAPD
YALAHWNYAMSLLALGQLEAGWQEYEWGAAAGTRTRFAATLPRWQGEDLAGKHLLLRAEQ
GLGDTLQFVRFAPELQRRGAKVTLECQPSLIPLLQGVAGIDHLVAQTGELPADAWGCQCY
LPLMSLPHLLHIGLADLPGPIPYLPLEAGRVRHWQDMLGPRSRFRVGLAWAGNPRHRNDH
QRSCPLAQFVELLAVPGVEFISLQLPAAELPQGLRDVTAGIRDFADTAAIVSQLDLVISV
DTAIIHLAGALGRPAWLLLPRDADWRWLQERQDSPWYPSLKLYRQKMPGQWLPVLQSVRR
DLESLAGNARPKMQDM