Protein Info for Dsui_1735 in Dechlorosoma suillum PS

Annotation: flagellar hook-basal body proteins

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 451 TIGR03506: flagellar hook-basal body protein" amino acids 1 to 433 (433 residues), 335.5 bits, see alignment E=2.8e-104 PF00460: Flg_bb_rod" amino acids 6 to 33 (28 residues), 35.3 bits, see alignment (E = 1.3e-12) PF07559: FlaE" amino acids 192 to 332 (141 residues), 105.1 bits, see alignment E=6.5e-34 PF06429: Flg_bbr_C" amino acids 372 to 450 (79 residues), 71.1 bits, see alignment E=9.6e-24

Best Hits

Predicted SEED Role

"Flagellar hook protein FlgE" in subsystem Flagellum

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See G8QG47 at UniProt or InterPro

Protein Sequence (451 amino acids)

>Dsui_1735 flagellar hook-basal body proteins (Dechlorosoma suillum PS)
MAFQQGLSGLNTSSKALDVIGNNVANSSTVGFKSADAHFADVYASTLGAGGANQVGIGTN
LSGIVQQFTQGNVSTTNNTLDIAINGNGFFRLSQNGAISYSRNGQFHLDKNGYIVNDQNL
RLTGYPAGMDGSIRQQNPRELQVTADLLKLSPVATGSSTGGEYAGAQVAVNLDSRVTDKT
FSVGAGGEPNIDPAGYNYSTGLTIYDSLGNPHTMTMYFVKTANPREWELYTNVDGTRMDG
AGDSPNLATPILITFDSVGQLETIGGAPVAPNPAAGGALPEIPVSIDLDQVATNLGRVTW
GATTPMTFNLNLAGTTQYGDAFATNRRVQDGYSSGNLAGLNIGKDGVIQGRYSNGQTRNV
GQMVLASFDNPNGLQAIGGNQWIETSTSGQPTVDAPGTGRLGEVQSNAVEESNVDLTSEL
VKMITQQRNYQANSQTIKTQDQIMQTIVNLR