Protein Info for Dsui_1648 in Dechlorosoma suillum PS

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 228 transmembrane" amino acids 12 to 35 (24 residues), see Phobius details amino acids 55 to 75 (21 residues), see Phobius details amino acids 83 to 108 (26 residues), see Phobius details amino acids 137 to 162 (26 residues), see Phobius details amino acids 168 to 191 (24 residues), see Phobius details amino acids 201 to 225 (25 residues), see Phobius details PF13386: DsbD_2" amino acids 12 to 216 (205 residues), 207.3 bits, see alignment E=1.1e-65

Best Hits

KEGG orthology group: K09792, hypothetical protein (inferred from 71% identity to dar:Daro_1049)

Predicted SEED Role

"Heavy-metal-associated domain (N-terminus) and membrane-bounded cytochrome biogenesis cycZ-like domain, possible membrane copper tolerance protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See G8QFG9 at UniProt or InterPro

Protein Sequence (228 amino acids)

>Dsui_1648 hypothetical protein (Dechlorosoma suillum PS)
MADSFLPTLLSVLLVGFLGGTHCIGMCGGIVGALSLGQAGGSRWSLHLAYNLGRIASYGL
AGLLAGAVGAAGAHLGEQWSLRLVLYVLANLMLVALGLYLLGATQALAWTERAGQGLWRR
LQPFSKRFLPARSPAQAFPLGLLWGWLPCGLVYSVLTTALVSGSAARGGAVMLAFGLGTL
PNLLLAGLLAARLKDFVRRPWVRGIAGLSVLGFGLWGLLGAWRLAHNI