Protein Info for Dsui_1643 in Dechlorosoma suillum PS

Annotation: uncharacterized protein involved in response to NO

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 405 transmembrane" amino acids 12 to 29 (18 residues), see Phobius details amino acids 50 to 74 (25 residues), see Phobius details amino acids 87 to 106 (20 residues), see Phobius details amino acids 111 to 134 (24 residues), see Phobius details amino acids 149 to 171 (23 residues), see Phobius details amino acids 184 to 208 (25 residues), see Phobius details amino acids 220 to 238 (19 residues), see Phobius details amino acids 244 to 260 (17 residues), see Phobius details amino acids 272 to 299 (28 residues), see Phobius details amino acids 305 to 326 (22 residues), see Phobius details amino acids 345 to 364 (20 residues), see Phobius details amino acids 372 to 389 (18 residues), see Phobius details signal peptide" amino acids 30 to 30 (1 residues), see Phobius details PF05940: NnrS" amino acids 4 to 399 (396 residues), 218.2 bits, see alignment E=1.2e-68

Best Hits

KEGG orthology group: None (inferred from 43% identity to eba:ebA5142)

Predicted SEED Role

"NnrS protein involved in response to NO" in subsystem Denitrification or Nitrosative stress or Oxidative stress

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See G8QFG4 at UniProt or InterPro

Protein Sequence (405 amino acids)

>Dsui_1643 uncharacterized protein involved in response to NO (Dechlorosoma suillum PS)
MFKAFFSAPHRVMFALGALQSLLAVLFWAADLGGRYAGLYGAPAWALPGIWLHGALMLFG
LFPPFIFGFLMTALPKWVSAPALTRGQYLPAFALLAGGWLLFWGGLLAAPLAVSGLVVAS
LGWLWGLVALARAVTWPQPRGFAPDRSHAYALLAALGLGLVALWAYAWGLAAMAGDGVRA
GIELGLWGCLLPVFFIVSHRMLPFFTAAVLKNYTIYRPMPLLWLVLACFLGHALLALVGW
HGALWLPDAVAAAVVIHFSWKWQLRRSLAVPMLAMIHGATVWLGLGLVLYACQGLALALG
GSFGGLAPLHAISIGYFVSMLLGMVTRVTLGHSGRPINAGDQTTWPLFWLFQSVPLLRIA
GEFLPLSGPFNLQWLASLAWLLVFALWVRRHGAMYLRPRPDGQPG