Protein Info for Dsui_1314 in Dechlorosoma suillum PS

Annotation: guanyl-specific ribonuclease Sa

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 130 signal peptide" amino acids 1 to 28 (28 residues), see Phobius details PF00545: Ribonuclease" amino acids 36 to 128 (93 residues), 85.1 bits, see alignment E=2e-28

Best Hits

KEGG orthology group: None (inferred from 61% identity to tmz:Tmz1t_1168)

Predicted SEED Role

"guanine-specific ribonuclease N1 and T1"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See G8QMD6 at UniProt or InterPro

Protein Sequence (130 amino acids)

>Dsui_1314 guanyl-specific ribonuclease Sa (Dechlorosoma suillum PS)
MRRSRLLPSLLAGLALLGGLLAGPAAAREPNPGPAFGDASVSVQELPAEARTTLNLIHRG
GPFPYPKDGSTFGNFERRLPLQPRGYYREYTVDTPGARNRGARRLIAGGQPPVVFYYTDD
HYRSFRRLRD