Protein Info for Dsui_1287 in Dechlorosoma suillum PS

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1200 1300 1400 1500 1592 signal peptide" amino acids 20 to 20 (1 residues), see Phobius details transmembrane" amino acids 21 to 38 (18 residues), see Phobius details PF28238: DUF6701_4th" amino acids 1449 to 1590 (142 residues), 69.2 bits, see alignment E=3.1e-23

Best Hits

Predicted SEED Role

"MSHA biogenesis protein MshQ" in subsystem Mannose-sensitive hemagglutinin type 4 pilus

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See G8QMA9 at UniProt or InterPro

Protein Sequence (1592 amino acids)

>Dsui_1287 hypothetical protein (Dechlorosoma suillum PS)
MPMINHCTRGSCVKNLIIKSLFLLVMMMAGSSVFAVTLTASPTACENLAGIGTQVWSNPG
RAVSSNTSYATVSLDGTISQYLYCHDFGFAVPAGATINGITVNVERRSSLTGNGGSRDSS
VSLVSGGVVVGSNLATATAYTTSDVVESHGGATNLWGAAWTPATVNAGAFGVAFAATKAS
SSGAAHIVYVDHIQILVDYTPAPRACVSAASGNWSAAATWNCGSGPGDGPPISIDSATIN
NHAISFNTSSSVASLTINSGSLTQTGTGTQTLTVSGNITNSGSILDNGSNGSFDITVGGS
VSNTGSTFTVDNLTVTGNVTSSSPMTVRTALSVSGNLNNSGATGLTAGTMTVSGTATSNA
PLTATTFNVGGDLTSSNALTVANLIFQKAGTQAATFYNSQNVVTNFTVNSGSTVSSSNYS
TLNIKGALTNNGSIALPNTSWIFNGTSAQTIGGSSDSSLGNMTMNNSAGVTLSRNVTVPG
TLTLTSGNITAGSYVLAVTGTYCPASISGGSAASYVIGNLRLSFPPYNATCTYPIGDTSA
YAPMTIAFPWFAGISGGTLTGSTTKGQHPQINTSGINPLMDVNRYWTLGVTGDTLTSLPS
GGSYNATFQFVAADILGGAQVSTFAGSRYTSGAWTSPVLALSSYTANSVNLSGLTLFGSF
VTGQPGSPNPGQCSVPPFVPSGVTCYCDSFTGSNLTSGIFNSKWTVSTLGPRSYTPSFVS
GRLRLTDNNTNEATSATLGAIFPAAGNYISVEFRQFAYNGSGADGLAVTLSDYSVAPNPG
AFGGSLGYAQKSGIVGFAGGWIGVGFDEFGNYTNPTEGRIDGPGYFSQVVAVRGSYAATT
PANLYSLGYPYLARSAVQSGSNTIDNRTSSVASRGYYYQVVIDARNYTTANKTAQIQVNR
DTSCSTDFCPTTGYVNLLAPFDAYAPGFTPTTAQVPVPDNWQISFTGSTGSSTNIHEISG
LRVCAQSIIPPNGTTASGFNAIDSAMARTDINVQQAGAHIYTKLVGVDFALNIAVLNSAG
TGIDSNYALTSNKTVTVELIDNSTTANQAATCSAKSSFASTTMSFTSTDKGFKLSPTFKI
NSAYSNVLVRMKDSTTTACSSDTFAIRPLSLTNVTAKVGSTDLVASSNGAGAAMTVKAGS
DFSLSATASPSSNYSGTPSIVTANVIDVASSGAISPAPLSCAFSAADTSSGTVSGTCQYR
EVGYFSLPVDALIDNTFTTVDQNGRDDCIVNSTSNTLSNGKYGCNIGTPSATSWGRFIPD
HFELSAVALDNRSELTTCSNRNLDGFTYMGEPIGLGFSIAAKAVGGSTTENYDFGRGYSR
LTMGNWLAAAGATPLDSNNFNLWALDNPATGSATVFPGGGGTRLGFTPGTVSTACSGSPT
NRWCAGVATITGNLVLNRAATADGPYASFTIGAVPRDQDGVSLAATALNLDADQSGSNER
AKLATTAVRFGLLQLTTAYGSELLPLSVGMEARFWNGLAFVLNAQDNCTAIQPTNVASAR
VAGETAATLGAPTVTQIAAGKGRLRFASPGLRSTFRVCVDLGGDANCAATSSAAMSYMTG
RWDGSALFDRDPSARAAFGLNRGAYLYYRENY