Protein Info for Dsui_1244 in Dechlorosoma suillum PS

Annotation: Protein of unknown function (DUF560)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 440 signal peptide" amino acids 1 to 25 (25 residues), see Phobius details PF14559: TPR_19" amino acids 69 to 118 (50 residues), 39.8 bits, see alignment 4.5e-14 PF04575: SlipAM" amino acids 202 to 440 (239 residues), 47.9 bits, see alignment E=1.4e-16

Best Hits

KEGG orthology group: None (inferred from 46% identity to slt:Slit_2212)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See G8QLQ4 at UniProt or InterPro

Protein Sequence (440 amino acids)

>Dsui_1244 Protein of unknown function (DUF560) (Dechlorosoma suillum PS)
MKVKKSVLNVCAVLSLLGCGAAWGADATLGQAGRLLESGKGSEAYVLLESLEPERAGEIE
YDLLLGLAALEAGQNTRAVFALERVLAQEPNNARARAEIARAYLALGETKNARREFENVR
SMGVPAEVGSTIERFLAAVERLEDEARTQVRGYLELGLGIDSNVNSGTSRGEYAIPFFGG
WMFPVGSGAKENGDTFTNVAGGINFRTPLQAGLAVTGGAAFSQRLNSNDTDFDNGSWDAN
LGLTKAVDKNQYSLALQASTFRLNGERYRDAMGFTGQWQHNYDSRNQASLYLQYASLTYP
GQAIRNTDRFVVGGAYAHAFREGQVIYGGAYVGTEMEKNELATFMGHDLVGVRIGGQMDL
APRWVGFANANLEQRRYHGSDPFFLSIRQDLQANINVGANFSPSREWHITPQFSYTRNDS
NLTLNDYHRQVVSVTVRRDF