Protein Info for Dsui_1242 in Dechlorosoma suillum PS

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 724 PF13844: Glyco_transf_41" amino acids 306 to 495 (190 residues), 109.5 bits, see alignment E=2.1e-35 amino acids 506 to 672 (167 residues), 109 bits, see alignment E=3.1e-35

Best Hits

Predicted SEED Role

"TPR domain protein, putative component of TonB system" in subsystem Ton and Tol transport systems

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See G8QLQ2 at UniProt or InterPro

Protein Sequence (724 amino acids)

>Dsui_1242 hypothetical protein (Dechlorosoma suillum PS)
MSDSALAPARDLLARGAPQAAREWLQANPPRPGDAAEHAFLLGVCQLQAGQPRLAVAPLE
HCLALDPSHINAANALATALHLQGNNARACQVLRLCLEYRPAAGECLLNLGRLLEMDGDH
AGAMAAYGRVPAATPALSFPAGLRHATLLSRMGQTEDALALLRTLTPEPADELRTLRQLQ
GEILLAAGRAPEAEALLAGATDARQQLLWGMALAAQARWEPARTALGEAWERAPGERRHW
TNPLTGQAFGPAPLPSPLQCFTGYHRQQVGRGEWAQRQTFARESAAYPLAPTATDWHSAF
ALFSAPLAPAVRRRLADRWADALLAAMPPATTLPQPRARHDGTLRIAYLSPDFGDHAMGH
CLRSFCRHHDRRRCHITLYADSRDDGSEVRRQLRREADAFTEVYGLSDGDLEQRMARDGI
QILVDLAGYTRGGRPRLARRPGSPLKVLYQGYPGTLGRGLADYALVDRHVCPPGSEAHWA
EALIRLPDSFFLLDSEAPAVPLLEAAELGAPAAPVVFACFNQTWKVDAQAMALWQAVLAA
VPEAVLWLHAETPAVAAALTRRAAEAGIGATRLHFSPGTTRPRYLARYRHVHAVLDTPLY
HGHGTGADALGMGTPVLSLQGEGFQARVGGSLVRALGLPQLAAESAEAYVATAIRLGRDE
AWRQALAADIRRGCATDGPLGTRRRVRQLEQAYARIWQHHRAGLAPASCAVEGGTATEDE
EKTA