Protein Info for Dsui_1235 in Dechlorosoma suillum PS

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 185 PF04751: DarP" amino acids 11 to 166 (156 residues), 162.5 bits, see alignment E=3.5e-52

Best Hits

Swiss-Prot: 55% identical to Y541_AROAE: UPF0307 protein AZOSEA05410 (AZOSEA05410) from Aromatoleum aromaticum (strain EbN1)

KEGG orthology group: K09889, ribosome-associated protein (inferred from 57% identity to azo:azo2793)

Predicted SEED Role

"FIG138315: Putative alpha helix protein" in subsystem Putative TldE-TldD proteolytic complex

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See G8QLP5 at UniProt or InterPro

Protein Sequence (185 amino acids)

>Dsui_1235 hypothetical protein (Dechlorosoma suillum PS)
MEELDPLDGEPVSKTKRKQAMQDKQDLGRALVELPPDRLKRLLGKVELSETLSGALLEYQ
RLPKREAQRRQLQYIGKLMRDVDPEPIQAALDVVNGASAAENAKLHRRERLRTLLLENEA
VALADIAAHWPQADLTHLRQLRRSALKEQEQNKPPKSYRAIFQVLKELEEGGAAAATGDD
AGEEA