Protein Info for Dsui_1230 in Dechlorosoma suillum PS

Annotation: TRAP-type uncharacterized transport system, periplasmic component

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 451 transmembrane" amino acids 14 to 37 (24 residues), see Phobius details amino acids 333 to 359 (27 residues), see Phobius details PF16868: NMT1_3" amino acids 48 to 323 (276 residues), 86.3 bits, see alignment E=2.9e-28 PF09084: NMT1" amino acids 105 to 210 (106 residues), 24.4 bits, see alignment E=2.6e-09

Best Hits

KEGG orthology group: None (inferred from 61% identity to dar:Daro_0549)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See G8QLP0 at UniProt or InterPro

Protein Sequence (451 amino acids)

>Dsui_1230 TRAP-type uncharacterized transport system, periplasmic component (Dechlorosoma suillum PS)
MGAKVRNSLLSLRDLLATAWPIVLVVALGFVVAVQFIQPAPPRHVVMSAGADSGAYYAFG
KKYAEILARNGITLEVRTSNGSAENLQRLLDKDSDVEIALVQGGVEAPRPDYLEEDEALP
LSSLGSMYYEPVWVFYRSERELERLHQLAGKRIAVGAEGSGIRGLALQLLAANEVPVDGK
HLLSLGGLKAAEELQQGRLDAAFVIAAPEAPVVQVLLRSPGIKVMNFAQAEAYTRRFPYL
SKIVLPEGAVDLVRNFPPHDTTLLAATANLVVHDSLHPAIQSLLLQAASEVHGKAGFFQR
RGDFPAVRDQSLPVADTAERYYKSGPPLLQRYLPFWAAILVDRLVVLLLPIFALLLPLLK
VAPSIYSWRIRSKIFRCYGDLKFLENELKESYDPGRKLEYLDRLDRIEDEAYRRNIPLAY
SDLLYTLREHIELVRHTLERLARHANVEETP