Protein Info for Dsui_1140 in Dechlorosoma suillum PS

Annotation: arabinose efflux permease family protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 403 transmembrane" amino acids 25 to 45 (21 residues), see Phobius details amino acids 51 to 72 (22 residues), see Phobius details amino acids 80 to 124 (45 residues), see Phobius details amino acids 147 to 171 (25 residues), see Phobius details amino acids 178 to 198 (21 residues), see Phobius details amino acids 226 to 250 (25 residues), see Phobius details amino acids 256 to 278 (23 residues), see Phobius details amino acids 297 to 323 (27 residues), see Phobius details amino acids 366 to 390 (25 residues), see Phobius details PF07690: MFS_1" amino acids 19 to 319 (301 residues), 46.3 bits, see alignment E=1.4e-16

Best Hits

KEGG orthology group: None (inferred from 67% identity to adk:Alide2_1768)

Predicted SEED Role

"PUTATIVE TRANSPORT TRANSMEMBRANE PROTEIN"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See G8QKT7 at UniProt or InterPro

Protein Sequence (403 amino acids)

>Dsui_1140 arabinose efflux permease family protein (Dechlorosoma suillum PS)
MTGRWLLPEGVDRVVLPLLVGKALRAFADGYVAVLLPAYLLALGFGTLDVGILSTTTLLG
SAFATLAVGAWGHRFHHRNLLLGAALLMLGTGLSFASLSAFLPLLLVAFVGTLNPSSGDV
SVFLPLEHARLAESGQGTARTTLFARYSLLGALFAALGALASGIPQLLVSVLGIELLSGF
RVMFVLYGLVGGTVWLLYRRMPAPRRECAVAAPQALGESKGVVVRLALLFSLDSFAGGLA
INALMALWFFQRFELSLAAAGSFFFWAGLLSAVSQLIAPKVAERIGLVNTMVFTHIPASI
CLIAAAFAPGLELAFALLFIRALLSQMDVPVRSAFVMAVVTPAERAAAASFTAVPRSLAS
AISPTIGGAMFAAGWLAAPLVACGALKICYDLMLWKAFRQRDP