Protein Info for Dsui_1130 in Dechlorosoma suillum PS

Annotation: heavy metal efflux pump, cobalt-zinc-cadmium

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1052 signal peptide" amino acids 1 to 31 (31 residues), see Phobius details transmembrane" amino acids 346 to 362 (17 residues), see Phobius details amino acids 368 to 387 (20 residues), see Phobius details amino acids 394 to 414 (21 residues), see Phobius details amino acids 452 to 471 (20 residues), see Phobius details amino acids 481 to 507 (27 residues), see Phobius details amino acids 540 to 558 (19 residues), see Phobius details amino acids 887 to 906 (20 residues), see Phobius details amino acids 913 to 932 (20 residues), see Phobius details amino acids 939 to 963 (25 residues), see Phobius details amino acids 985 to 1004 (20 residues), see Phobius details amino acids 1016 to 1039 (24 residues), see Phobius details TIGR00914: heavy metal efflux pump, CzcA family" amino acids 1 to 1049 (1049 residues), 1565.4 bits, see alignment E=0 PF00873: ACR_tran" amino acids 5 to 1043 (1039 residues), 1072.1 bits, see alignment E=0

Best Hits

KEGG orthology group: K07239, heavy-metal exporter, HME family (inferred from 67% identity to aex:Astex_3856)

MetaCyc: 61% identical to cation efflux system protein (Pseudomonas putida KT2440)
RXN1G01-61; TRANS-RXN0-200; TRANS-RXN0-244

Predicted SEED Role

"Cobalt-zinc-cadmium resistance protein CzcA; Cation efflux system protein CusA"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See G8QKS7 at UniProt or InterPro

Protein Sequence (1052 amino acids)

>Dsui_1130 heavy metal efflux pump, cobalt-zinc-cadmium (Dechlorosoma suillum PS)
MLERMIRAAIAHRWLVLILVLGTSALGVWSYGRLPIDAVPDITNVQVQVNSEAPGYSPLE
AEQRVTFPVETALAGMARLKYTRSISRYGLSQVTVVFEDGTDIYFARQQVSERLQQASSQ
LPAGVKPTLGPVATGLGEIFMYTVEATPGATKADGKPWMPTDLRTLQDWVIRPQLRNLKG
VTEVNTIGGNVQQFHVTPDPAKMVAYKLTIDDLLQAIERNNANTGAGYIERGGEQNLIRI
PGQVGDEAGLREIVVAMRDGLPLRISDIATVQIGSELRTGAATRDGREVVLGTVFMLIGE
NSREVAMRAATRLKEIDASLPEGVSARAVYDRTQLVDRSIATVQKNLLEGALLVIVVLFL
LLGNIRAALITAAVIPVAMLMTITGMVQNRVSANLMSLGALDFGLIVDGAVIIVENCLRR
FGERQHALGRLLSIEERFQLAAKASAEVIKPSLFGLFIIAAVYLPIFALSGVEGKTFHPM
AITVVMALVAAMVLSLTFVPAAIAQFVTGKVEEKETRLMQRLHGIYAPLLEKSLSLQKPV
IGAAAVLVVLCGLLATRLGTEFIPNLDEGDIALHALRIPGTSLTQAIGMQAQLEARIKQF
PEVDKVVGKLGTAEVATDPMPPSVADTFILLKERKDWPDPRKSKATLVAELEEAVRAIPG
NNYEFTQPVQMRMNELIAGVRAEVAIKVFGDDLQALTAVGKQIEKVAGSISGSADVKLEQ
VTGLPLLVIKPDRAALARYGLAVADIQDTVSAAMGGATAGQLFEGDRRFDIVVRLPDAQR
QDPKALAALPIALPATSRADGASLSRMPGVVPLSAVATIAVELGPNQVSRENGKRRVVIT
SNVRGRDLGSFVEELRGKVAAEVVLPVGSWVEYGGTFEQLISAGQRLSVVVPVVLVMIFG
LLFMAFGSAKDAAIVFSGVPLALTGGVLALWLRGIPFSISAGVGFIALSGVAVLNGLVMI
TFIRKLRELGQPLHTAVTEGALTRLRPVLMTALVASLGFVPMALNVGTGAEVQRPLATVV
IGGIISSTLLTLLVLPVLYRLIHRNENEETAA