Protein Info for Dsui_1007 in Dechlorosoma suillum PS

Annotation: arabinose efflux permease family protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 404 signal peptide" amino acids 1 to 29 (29 residues), see Phobius details transmembrane" amino acids 42 to 63 (22 residues), see Phobius details amino acids 75 to 96 (22 residues), see Phobius details amino acids 103 to 126 (24 residues), see Phobius details amino acids 138 to 158 (21 residues), see Phobius details amino acids 164 to 185 (22 residues), see Phobius details amino acids 218 to 240 (23 residues), see Phobius details amino acids 252 to 271 (20 residues), see Phobius details amino acids 282 to 300 (19 residues), see Phobius details amino acids 306 to 330 (25 residues), see Phobius details amino acids 339 to 361 (23 residues), see Phobius details amino acids 373 to 392 (20 residues), see Phobius details PF07690: MFS_1" amino acids 20 to 357 (338 residues), 96.8 bits, see alignment E=6.6e-32 amino acids 247 to 396 (150 residues), 36.5 bits, see alignment E=1.4e-13

Best Hits

KEGG orthology group: None (inferred from 76% identity to dar:Daro_3581)

Predicted SEED Role

"Transmembrane transport protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See G8QJI6 at UniProt or InterPro

Protein Sequence (404 amino acids)

>Dsui_1007 arabinose efflux permease family protein (Dechlorosoma suillum PS)
MFRTLSRPEVLVTTLAAAGILMVTMGARQSLGLFVAPLNTHTGLGIASISLAMAVGQFTW
GAIQPVAGAVADRYGARAVLIGGLLVLAVGSALTPFMDSGLGLIFSIGLLSAMGAGAGSF
SVLIGAAAQRLPVEARGAASGVINAGGSFGQFVFAPILQRLIQSIGWMGALWAMAIATLA
ALPLVGRLAGAPPAHAPTAATGGGLGQAVKEAMGDRSYLLLHAGFFTCGFHIAFLVTHLP
GEVNLCGLPPSVASWSLAIIGLANIFGSLYAGSCVARYRSKYILAAMYASRALLIIWYLM
MPRTEWTYYLFAAGLGFTWLATVPPTAAIVGKLFGVRYLGTLFGLTLLSHQIGGFLGAYL
GGLTLTRFGDYGWMWYADIALAAAAALVNLPIREKPVQPVAQPA