Protein Info for Dsui_0921 in Dechlorosoma suillum PS

Annotation: PAS domain S-box

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1200 1300 1430 transmembrane" amino acids 6 to 28 (23 residues), see Phobius details amino acids 196 to 217 (22 residues), see Phobius details TIGR00229: PAS domain S-box protein" amino acids 282 to 407 (126 residues), 59.2 bits, see alignment E=2.2e-20 amino acids 533 to 656 (124 residues), 63.1 bits, see alignment E=1.4e-21 PF00989: PAS" amino acids 286 to 397 (112 residues), 43.8 bits, see alignment 1.1e-14 PF13188: PAS_8" amino acids 286 to 336 (51 residues), 21.2 bits, see alignment (E = 9.2e-08) amino acids 538 to 591 (54 residues), 18.6 bits, see alignment (E = 6.3e-07) PF08448: PAS_4" amino acids 294 to 401 (108 residues), 61.7 bits, see alignment 3.3e-20 PF13426: PAS_9" amino acids 295 to 398 (104 residues), 28.6 bits, see alignment 6.3e-10 amino acids 550 to 648 (99 residues), 41.4 bits, see alignment 6.5e-14 PF08447: PAS_3" amino acids 435 to 518 (84 residues), 40.7 bits, see alignment 1e-13 PF00512: HisKA" amino acids 688 to 752 (65 residues), 72.6 bits, see alignment 1e-23 PF02518: HATPase_c" amino acids 798 to 912 (115 residues), 92.7 bits, see alignment E=9.3e-30 PF00072: Response_reg" amino acids 934 to 1047 (114 residues), 45.7 bits, see alignment E=3.1e-15 amino acids 1078 to 1186 (109 residues), 87.4 bits, see alignment 3.5e-28 PF01627: Hpt" amino acids 1249 to 1327 (79 residues), 28.6 bits, see alignment 6.4e-10

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See G8QIV9 at UniProt or InterPro

Protein Sequence (1430 amino acids)

>Dsui_0921 PAS domain S-box (Dechlorosoma suillum PS)
MKRRFTFFLIFFLPVILVVVMAAAYSYWSLSSLRDEQQLSNLQQVNDLQMVADASRLGHD
MLAVQQLINATLRQAKAGTVEEAAAYQVHVQVVDRLKDMESLLQRLSNVPGLGPEVDGEL
KQILVDFKDYQHYSIMATDIIAVDLRVADSHVAQATARYLAFAEHAQNVSALLTQRTHAR
IDAAERNMDDYVQRTLLIGVLGITVMGLLWFFVTYFVTRQLSLIVDSLQQLSLSEDGGLS
LREVEHLSRMPGGGLLTDMAKAVLAFREAVVARGHMQAALEAERQHLKSLIQGMPDLVWL
KDPAGIYLACNSRFESLFGHREAEIVGRTDYDFVGRELADFFRDNDRRAMALGHASRNEE
WLVFAADGHRELVETIKTPIYDRDGVVLGVLGVARDITPLHQSQETLRQSEAALKRTQTV
ARIGSWKIDIPANLLHWSEEAHHLLGVPWDHGVGFDEFLAQVHGDDRAWVRSAWLAALEG
AEFDIEHRMVVDGTVKWVRQRAELEFDEAGKPLRGIGMVQDITAIKDASETLKQREKIFR
SITNQAAIGIVLIDAETMTFAEFNDAACECLGYTREEFAKLSVYDIQGVHDRAGVDARRA
QILAQREAAFENQRRHKDGSLRDFWVTVKVLRLNGRDYLSSVWTDITEAKENERALLRYQ
NQLEELVAARTAELAAAKEAAEAANRSKSSFLANMSHEIRTPMNAIIGLTHLIRRDIATE
RQRQQLDKVSNAAHHLLGIINDILDFSKIEAGKMSLEPTDFEVDRVIHNVCTLVAEKAEA
KGLEVVVDIARLPPALHGDGLRLGQVLLNFVGNAVKFTERGSVVVRGYVARQEADSLWVR
LEVADTGIGLSREQQQCLFQAFTQADVSTTRQYGGTGLGLAISRRLAEMMGGRVGVDSES
GKGSTFWIEAPFGSVAAHDHLELPPCLPRNLRALAVDDSEDARESLAHTLAALGTRVDTA
ASGEAALDAVLAADRLGDPYQLVLLDWLMPPPDGLETGRCIRTLPLNVQPQQLLVSAAKD
IPATALSEAGFAAFIAKPVTPASVLVALEGAFGDTPPLSRSPGDEMERSLARYRNQRILL
AEDNPLNQEVALELLRHVGLAVDLAENGKEALELARGKAYALILMDIQMPVMDGLEASRQ
IRALPGYAGTPILAMTANAFSEDRDLCIAAGMNDHVAKPVDPDQLYGTLLRWLPEPGRDV
VVRPPLPAAEAPAATADALAAALEAVPGLELAQALRVVRGNRTRLAQFLRKFSVDHGGDG
RRIEACLGFGETAEAARVVHTLKGLAGSLGLAAIQAHTLALEEALRGSLPQAEVDARLAR
LEGALAEFNAALAGLEGAVEAAAPGIDWAQLGREVEVLQRQLAVDDLDASRTFQSLRPTL
EAALGAEVRTLAAQIDDFNLEEALHTLQALIDAEPRLQEAGPPAASMKEA