Protein Info for Dsui_0877 in Dechlorosoma suillum PS

Annotation: cytochrome c oxidase accessory protein FixG

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 459 transmembrane" amino acids 35 to 55 (21 residues), see Phobius details amino acids 82 to 104 (23 residues), see Phobius details amino acids 156 to 174 (19 residues), see Phobius details amino acids 185 to 205 (21 residues), see Phobius details amino acids 328 to 346 (19 residues), see Phobius details TIGR02745: cytochrome c oxidase accessory protein CcoG" amino acids 32 to 457 (426 residues), 468.7 bits, see alignment E=1e-144 PF12801: Fer4_5" amino acids 86 to 125 (40 residues), 31.8 bits, see alignment 5.2e-11 amino acids 194 to 229 (36 residues), 8.2 bits, see alignment 0.0012 PF13746: Fer4_18" amino acids 211 to 310 (100 residues), 133.7 bits, see alignment E=1.6e-42 PF13534: Fer4_17" amino acids 214 to 272 (59 residues), 26.6 bits, see alignment E=3.2e-09 PF13183: Fer4_8" amino acids 214 to 271 (58 residues), 27.7 bits, see alignment 1.4e-09 PF13237: Fer4_10" amino acids 214 to 268 (55 residues), 25.1 bits, see alignment 6.6e-09 PF13187: Fer4_9" amino acids 215 to 270 (56 residues), 28 bits, see alignment 8.3e-10 PF00037: Fer4" amino acids 256 to 270 (15 residues), 21.9 bits, see alignment (E = 5.3e-08) PF11614: FixG_C" amino acids 343 to 459 (117 residues), 96.4 bits, see alignment E=6.2e-31

Best Hits

KEGG orthology group: None (inferred from 64% identity to tmz:Tmz1t_2223)

Predicted SEED Role

"Type cbb3 cytochrome oxidase biogenesis protein CcoG, involved in Cu oxidation" in subsystem Biogenesis of cbb3-type cytochrome c oxidases or Terminal cytochrome C oxidases

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See G8QIC3 at UniProt or InterPro

Protein Sequence (459 amino acids)

>Dsui_0877 cytochrome c oxidase accessory protein FixG (Dechlorosoma suillum PS)
MSHKTVNKVQSARIALYRNKRQIHPRAVSGRFNSLRWLMVWATQIVFYGACWLEWDGRQA
LLFDIVHEKLYLFGLVLWPQDALLLALVLILSATGLFLVTAVAGRLFCGFACPQTVYTSI
FMWVEAKVEGDHLARLKLAERPLDADKLLRKGAKHGLWLAIALWTGITFVGYFTPIRQLL
PHLAAFTLGPWEAFWLIFYTLFTYVQAGFTREMVCQHMCPYSRFQGVMFDPETRNVAYDA
ARGEPRGARRQSGLGDCIDCGICVQVCPTGIDIRDGLQYQCINCGLCIDACDTVMDKVGS
PRGLIRFASETELASGRQSSRHWKRPRLAVYATVLGCFTLLGAWTLSERSLLLVDVLRDR
GSLVRETAEGDFENAYTLKLMNLAEQEREFEVRAEGLPGIRIQGAQRFAAPAGATAPVHV
TVAVPGPAERQGIQPIRFHIVAVDDPRTRREERSTFVLP