Protein Info for Dsui_0848 in Dechlorosoma suillum PS

Annotation: ATPase involved in chromosome partitioning

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 260 PF06564: CBP_BcsQ" amino acids 1 to 243 (243 residues), 41.9 bits, see alignment E=3.1e-14 PF13614: AAA_31" amino acids 1 to 174 (174 residues), 208.2 bits, see alignment E=3.3e-65 PF10609: ParA" amino acids 2 to 43 (42 residues), 34 bits, see alignment 7.5e-12 PF09140: MipZ" amino acids 3 to 41 (39 residues), 29 bits, see alignment 2.4e-10 PF01656: CbiA" amino acids 4 to 225 (222 residues), 98.5 bits, see alignment E=1e-31 PF00142: Fer4_NifH" amino acids 9 to 63 (55 residues), 31.3 bits, see alignment E=5.3e-11 PF02374: ArsA_ATPase" amino acids 9 to 42 (34 residues), 29.3 bits, see alignment 1.9e-10

Best Hits

Swiss-Prot: 59% identical to YGIDB_PSEPU: Uncharacterized protein in gidB 3'region from Pseudomonas putida

KEGG orthology group: K03496, chromosome partitioning protein (inferred from 76% identity to app:CAP2UW1_4361)

Predicted SEED Role

"Chromosome (plasmid) partitioning protein ParA" in subsystem Bacterial Cytoskeleton or Plasmid replication or Two cell division clusters relating to chromosome partitioning

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See G8QI94 at UniProt or InterPro

Protein Sequence (260 amino acids)

>Dsui_0848 ATPase involved in chromosome partitioning (Dechlorosoma suillum PS)
MKILAITNQKGGVGKTTTSVNLAACLATLGQRVLLIDLDPQGNATTGCGIFKKEALPSVY
QILLGAATLEQATIKTEFGFDVIPANRELAGAEVELIDVGQRERRLKEALDGQAYDFVLI
DCPPALNLLTVNALAAAQAVMIPMQCEYYALEGLTDLVTTLRKVRANLNPALEIEGLLRT
MYNSQSTLNQQVSAELESHFSGKVYRTVIPRNVRLAEAPSYGKPVIAFDKTSKGALSYLA
LAEEMLERIGGAPRQQEVAA