Protein Info for Dsui_0794 in Dechlorosoma suillum PS

Annotation: putative protease with the C-terminal PDZ domain

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 612 PF17899: Peptidase_M61_N" amino acids 15 to 196 (182 residues), 175.9 bits, see alignment E=1.1e-55 PF05299: Peptidase_M61" amino acids 296 to 412 (117 residues), 163.4 bits, see alignment E=4e-52 PF13180: PDZ_2" amino acids 504 to 582 (79 residues), 32.9 bits, see alignment E=9.8e-12

Best Hits

KEGG orthology group: None (inferred from 64% identity to eba:ebA6315)

Predicted SEED Role

"protease, putative"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See G8QHQ0 at UniProt or InterPro

Protein Sequence (612 amino acids)

>Dsui_0794 putative protease with the C-terminal PDZ domain (Dechlorosoma suillum PS)
MAKKTPSVTLPSVDYRLVPLRPEAHLFQVTCTVTDPDPAGQRFALPTWIPGSYMIREFAK
NIVRIEASAGGKAVGLTQIDKATWQAEKVPAGTALSVTMEVYAWDLSVRGAHLDASHGFF
NGTSVFLCALGQEDRPCRVELVKPQGKAYAAWRVATSLPVAKGEKGEMRGAAALYGFGRY
RAADYDELIDHPVEMGTFALIEFKARGVPHAIAVTGRTDVDLKRLAADLKPICEWQIDLF
GGKAPMDRYVFLVMAVGDGYGGLEHRASTALLCSRDDLPNSNTPASGPLPEAYVTFLGLC
SHEYFHTWNVKRIKPAAFVPYDLTQEAYTRLLWAFEGFTSYYDDLCLVRSGAIDSATYLN
LLAKTASAVKKGPGRHLQSVAESSFTAWTKYYRQDENAPNAVVSYYAKGALIALALDLKL
RAESGGKANLDQVMQLLWQRHGRTGVGVAEEGPNSVFAAVVEVGGAATARWLKQAVTGTG
DLPLERLLKPFGVTLAWEAASSLPVLGAKTGGEGSEVKLTSVYNGGPAEAAGLSAGDVLI
AWDGLKLTPAALEKRLKRHRAGDQVKLHAFRRDELIEASLTLAAPAADTAKLSLTAKADR
AAQALRQGWIGA